Literature DB >> 17357723

Iterative voting for inference of structural saliency and characterization of subcellular events.

Bahram Parvin1, Qing Yang, Ju Han, Hang Chang, Bjorn Rydberg, Mary Helen Barcellos-Hoff.   

Abstract

Saliency is an important perceptual cue that occurs at different levels of resolution. Important attributes of saliency are symmetry, continuity, and closure. Detection of these attributes is often hindered by noise, variation in scale, and incomplete information. This paper introduces the iterative voting method, which uses oriented kernels for inferring saliency as it relates to symmetry. A unique aspect of the technique is the kernel topography, which is refined and reoriented iteratively. The technique can cluster and group nonconvex perceptual circular symmetries along the radial line of an object's shape. It has an excellent noise immunity and is shown to be tolerant to perturbation in scale. The application of this technique to images obtained through various modes of microscopy is demonstrated. Furthermore, as a case example, the method has been applied to quantify kinetics of nuclear foci formation that are formed by phosphorylation of histone gammaH2AX following ionizing radiation. Iterative voting has been implemented in both 2-D and 3-D for multi image analysis.

Mesh:

Year:  2007        PMID: 17357723     DOI: 10.1109/tip.2007.891154

Source DB:  PubMed          Journal:  IEEE Trans Image Process        ISSN: 1057-7149            Impact factor:   10.856


  44 in total

1.  Robust segmentation of overlapping cells in histopathology specimens using parallel seed detection and repulsive level set.

Authors:  Xin Qi; Fuyong Xing; David J Foran; Lin Yang
Journal:  IEEE Trans Biomed Eng       Date:  2011-12-09       Impact factor: 4.538

2.  Iterative tensor voting for perceptual grouping of ill-defined curvilinear structures.

Authors:  Leandro A Loss; George Bebis; Bahram Parvin
Journal:  IEEE Trans Med Imaging       Date:  2011-03-17       Impact factor: 10.048

3.  An automated method for cell detection in zebrafish.

Authors:  Tianming Liu; Gang Li; Jingxin Nie; Ashley Tarokh; Xiaobo Zhou; Lei Guo; Jarema Malicki; Weiming Xia; Stephen T C Wong
Journal:  Neuroinformatics       Date:  2008-02-21

4.  Segmentation of heterogeneous blob objects through voting and level set formulation.

Authors:  Hang Chang; Qing Yang; Bahram Parvin
Journal:  Pattern Recognit Lett       Date:  2007       Impact factor: 3.756

5.  Automated profiling of individual cell-cell interactions from high-throughput time-lapse imaging microscopy in nanowell grids (TIMING).

Authors:  Amine Merouane; Nicolas Rey-Villamizar; Yanbin Lu; Ivan Liadi; Gabrielle Romain; Jennifer Lu; Harjeet Singh; Laurence J N Cooper; Navin Varadarajan; Badrinath Roysam
Journal:  Bioinformatics       Date:  2015-06-09       Impact factor: 6.937

6.  Convolutional neural network initialized active contour model with adaptive ellipse fitting for nuclear segmentation on breast histopathological images.

Authors:  Jun Xu; Lei Gong; Guanhao Wang; Cheng Lu; Hannah Gilmore; Shaoting Zhang; Anant Madabhushi
Journal:  J Med Imaging (Bellingham)       Date:  2019-02-08

7.  Effective nuclei segmentation with sparse shape prior and dynamic occlusion constraint for glioblastoma pathology images.

Authors:  Pengyue Zhang; Fusheng Wang; George Teodoro; Yanhui Liang; Mousumi Roy; Daniel Brat; Jun Kong
Journal:  J Med Imaging (Bellingham)       Date:  2019-03-14

8.  Deep Voting: A Robust Approach Toward Nucleus Localization in Microscopy Images.

Authors:  Yuanpu Xie; Xiangfei Kong; Fuyong Xing; Fujun Liu; Hai Su; Lin Yang
Journal:  Med Image Comput Comput Assist Interv       Date:  2015-11-18

9.  Invariant delineation of nuclear architecture in glioblastoma multiforme for clinical and molecular association.

Authors:  Hang Chang; Ju Han; Alexander Borowsky; Leandro Loss; Joe W Gray; Paul T Spellman; Bahram Parvin
Journal:  IEEE Trans Med Imaging       Date:  2012-12-04       Impact factor: 10.048

10.  Linking changes in epithelial morphogenesis to cancer mutations using computational modeling.

Authors:  Katarzyna A Rejniak; Shizhen E Wang; Nicole S Bryce; Hang Chang; Bahram Parvin; Jerome Jourquin; Lourdes Estrada; Joe W Gray; Carlos L Arteaga; Alissa M Weaver; Vito Quaranta; Alexander R A Anderson
Journal:  PLoS Comput Biol       Date:  2010-08-26       Impact factor: 4.475

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