Literature DB >> 28862338

Automated Tracking of Cell Migration with Rapid Data Analysis.

Brian J DuChez1.   

Abstract

Cell migration is essential for many biological processes including development, wound healing, and metastasis. However, studying cell migration often requires the time-consuming and labor-intensive task of manually tracking cells. To accelerate the task of obtaining coordinate positions of migrating cells, we have developed a graphical user interface (GUI) capable of automating the tracking of fluorescently labeled nuclei. This GUI provides an intuitive user interface that makes automated tracking accessible to researchers with no image-processing experience or familiarity with particle-tracking approaches. Using this GUI, users can interactively determine a minimum of four parameters to identify fluorescently labeled cells and automate acquisition of cell trajectories. Additional features allow for batch processing of numerous time-lapse images, curation of unwanted tracks, and subsequent statistical analysis of tracked cells. Statistical outputs allow users to evaluate migratory phenotypes, including cell speed, distance, displacement, and persistence, as well as measures of directional movement, such as forward migration index (FMI) and angular displacement. © 2017 by John Wiley & Sons, Inc.
Copyright © 2017 John Wiley & Sons, Inc.

Entities:  

Keywords:  automated tracking; cell migration; cell tracking; time-lapse imaging

Mesh:

Year:  2017        PMID: 28862338      PMCID: PMC5654555          DOI: 10.1002/cpcb.28

Source DB:  PubMed          Journal:  Curr Protoc Cell Biol        ISSN: 1934-2616


  12 in total

Review 1.  Cutaneous wound healing.

Authors:  A J Singer; R A Clark
Journal:  N Engl J Med       Date:  1999-09-02       Impact factor: 91.245

2.  Properties of lipid microdomains in a muscle cell membrane visualized by single molecule microscopy.

Authors:  G J Schütz; G Kada; V P Pastushenko; H Schindler
Journal:  EMBO J       Date:  2000-03-01       Impact factor: 11.598

Review 3.  Taking Aim at Moving Targets in Computational Cell Migration.

Authors:  Paola Masuzzo; Marleen Van Troys; Christophe Ampe; Lennart Martens
Journal:  Trends Cell Biol       Date:  2015-11-10       Impact factor: 20.808

Review 4.  A review of progress in single particle tracking: from methods to biophysical insights.

Authors:  Carlo Manzo; Maria F Garcia-Parajo
Journal:  Rep Prog Phys       Date:  2015-10-29

5.  Single-molecule imaging of EGFR signalling on the surface of living cells.

Authors:  Y Sako; S Minoghchi; T Yanagida
Journal:  Nat Cell Biol       Date:  2000-03       Impact factor: 28.824

6.  Ligand-bound quantum dot probes for studying the molecular scale dynamics of receptor endocytic trafficking in live cells.

Authors:  Sujata Sundara Rajan; Hong Yan Liu; Tania Q Vu
Journal:  ACS Nano       Date:  2008-06       Impact factor: 15.881

Review 7.  Tracking in cell and developmental biology.

Authors:  Erik Meijering; Oleh Dzyubachyk; Ihor Smal; Wiggert A van Cappellen
Journal:  Semin Cell Dev Biol       Date:  2009-08-04       Impact factor: 7.727

Review 8.  Cancer invasion and the microenvironment: plasticity and reciprocity.

Authors:  Peter Friedl; Stephanie Alexander
Journal:  Cell       Date:  2011-11-23       Impact factor: 41.582

9.  Automated tracking of migrating cells in phase-contrast video microscopy sequences using image registration.

Authors:  A J Hand; T Sun; D C Barber; D R Hose; S MacNeil
Journal:  J Microsc       Date:  2009-04       Impact factor: 1.758

10.  Automated cell tracking and analysis in phase-contrast videos (iTrack4U): development of Java software based on combined mean-shift processes.

Authors:  Fabrice P Cordelières; Valérie Petit; Mayuko Kumasaka; Olivier Debeir; Véronique Letort; Stuart J Gallagher; Lionel Larue
Journal:  PLoS One       Date:  2013-11-27       Impact factor: 3.240

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  6 in total

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Authors:  Alfonso Bolado-Carrancio; Oleksii S Rukhlenko; Elena Nikonova; Mikhail A Tsyganov; Anne Wheeler; Amaya Garcia-Munoz; Walter Kolch; Alex von Kriegsheim; Boris N Kholodenko
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2.  AI-Driven Cell Tracking to Enable High-Throughput Drug Screening Targeting Airway Epithelial Repair for Children with Asthma.

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3.  Durotaxis by Human Cancer Cells.

Authors:  Brian J DuChez; Andrew D Doyle; Emilios K Dimitriadis; Kenneth M Yamada
Journal:  Biophys J       Date:  2019-01-12       Impact factor: 4.033

4.  Direct comparison of five different 3D extracellular matrix model systems for characterization of cancer cell migration.

Authors:  Yoshinari Shinsato; Andrew D Doyle; Weimin Li; Kenneth M Yamada
Journal:  Cancer Rep (Hoboken)       Date:  2020-06-08

5.  Extracellular Protein Fibulin-7 and Its C-Terminal Fragment Have In Vivo Antiangiogenic Activity.

Authors:  Tomoko Ikeuchi; Susana de Vega; Patricia Forcinito; Andrew D Doyle; Juan Amaral; Ignacio R Rodriguez; Eri Arikawa-Hirasawa; Yoshihiko Yamada
Journal:  Sci Rep       Date:  2018-12-05       Impact factor: 4.379

6.  Automated cell tracking using StarDist and TrackMate.

Authors:  Elnaz Fazeli; Nathan H Roy; Gautier Follain; Romain F Laine; Lucas von Chamier; Pekka E Hänninen; John E Eriksson; Jean-Yves Tinevez; Guillaume Jacquemet
Journal:  F1000Res       Date:  2020-10-28
  6 in total

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