Literature DB >> 26481052

Taking Aim at Moving Targets in Computational Cell Migration.

Paola Masuzzo1, Marleen Van Troys2, Christophe Ampe2, Lennart Martens3.   

Abstract

Cell migration is central to the development and maintenance of multicellular organisms. Fundamental understanding of cell migration can, for example, direct novel therapeutic strategies to control invasive tumor cells. However, the study of cell migration yields an overabundance of experimental data that require demanding processing and analysis for results extraction. Computational methods and tools have therefore become essential in the quantification and modeling of cell migration data. We review computational approaches for the key tasks in the quantification of in vitro cell migration: image pre-processing, motion estimation and feature extraction. Moreover, we summarize the current state-of-the-art for in silico modeling of cell migration. Finally, we provide a list of available software tools for cell migration to assist researchers in choosing the most appropriate solution for their needs.
Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  algorithms; bioinformatics; cell migration; cell tracking; image processing; modeling

Mesh:

Year:  2015        PMID: 26481052     DOI: 10.1016/j.tcb.2015.09.003

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  27 in total

1.  Collective cell migration has distinct directionality and speed dynamics.

Authors:  Yan Zhang; Guoqing Xu; Rachel M Lee; Zijie Zhu; Jiandong Wu; Simon Liao; Gong Zhang; Yaohui Sun; Alex Mogilner; Wolfgang Losert; Tingrui Pan; Francis Lin; Zhengping Xu; Min Zhao
Journal:  Cell Mol Life Sci       Date:  2017-06-13       Impact factor: 9.261

2.  In vitro cell migration quantification method for scratch assays.

Authors:  Ana Victoria Ponce Bobadilla; Jazmine Arévalo; Eduard Sarró; Helen M Byrne; Philip K Maini; Thomas Carraro; Simone Balocco; Anna Meseguer; Tomás Alarcón
Journal:  J R Soc Interface       Date:  2019-02-28       Impact factor: 4.118

3.  Data-driven modeling reveals cell behaviors controlling self-organization during Myxococcus xanthus development.

Authors:  Christopher R Cotter; Heinz-Bernd Schüttler; Oleg A Igoshin; Lawrence J Shimkets
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-22       Impact factor: 11.205

4.  Intravital Microscopy to Visualize Murine Small Intestinal Intraepithelial Lymphocyte Migration.

Authors:  Matthew Fischer; Karen L Edelblum
Journal:  Curr Protoc       Date:  2022-08

5.  Automated Tracking of Cell Migration with Rapid Data Analysis.

Authors:  Brian J DuChez
Journal:  Curr Protoc Cell Biol       Date:  2017-09-01

6.  An end-to-end software solution for the analysis of high-throughput single-cell migration data.

Authors:  Paola Masuzzo; Lynn Huyck; Aleksandra Simiczyjew; Christophe Ampe; Lennart Martens; Marleen Van Troys
Journal:  Sci Rep       Date:  2017-02-13       Impact factor: 4.379

Review 7.  Dancing Styles of Collective Cell Migration: Image-Based Computational Analysis of JRAB/MICAL-L2.

Authors:  Ayuko Sakane; Shin Yoshizawa; Hideo Yokota; Takuya Sasaki
Journal:  Front Cell Dev Biol       Date:  2018-02-05

8.  Oscillatory signatures underlie growth regimes in Arabidopsis pollen tubes: computational methods to estimate tip location, periodicity, and synchronization in growing cells.

Authors:  Daniel S C Damineli; Maria Teresa Portes; José A Feijó
Journal:  J Exp Bot       Date:  2017-06-01       Impact factor: 6.992

9.  A stochastic algorithm for accurately predicting path persistence of cells migrating in 3D matrix environments.

Authors:  Benjamin Michael Yeoman; Parag Katira
Journal:  PLoS One       Date:  2018-11-15       Impact factor: 3.240

10.  A Novel Method for Effective Cell Segmentation and Tracking in Phase Contrast Microscopic Images.

Authors:  Hongju Jo; Junghun Han; Yoon Suk Kim; Yongheum Lee; Sejung Yang
Journal:  Sensors (Basel)       Date:  2021-05-18       Impact factor: 3.576

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