| Literature DB >> 28851843 |
Ryota Ito1, Mustapha M Mustapha1,2, Adam D Tomich1, Jake D Callaghan3, Christi L McElheny1, Roberta T Mettus1, Robert M Q Shanks3, Nicolas Sluis-Cremer1,2, Yohei Doi4,2,5.
Abstract
Fosfomycin is a decades-old antibiotic which is being revisited because of its perceived activity against many extensively drug-resistant Gram-negative pathogens. FosA proteins are Mn2+ and K+-dependent glutathione S-transferases which confer fosfomycin resistance in Gram-negative bacteria by conjugation of glutathione to the antibiotic. Plasmid-borne fosA variants have been reported in fosfomycin-resistant Escherichia coli strains. However, the prevalence and distribution of fosA in other Gram-negative bacteria are not known. We systematically surveyed the presence of fosA in Gram-negative bacteria in over 18,000 published genomes from 18 Gram-negative species and investigated their contribution to fosfomycin resistance. We show that FosA homologues are present in the majority of genomes in some species (e.g., Klebsiella spp., Enterobacter spp., Serratia marcescens, and Pseudomonas aeruginosa), whereas they are largely absent in others (e.g., E. coli, Acinetobacter baumannii, and Burkholderia cepacia). FosA proteins in different bacterial pathogens are highly divergent, but key amino acid residues in the active site are conserved. Chromosomal fosA genes conferred high-level fosfomycin resistance when expressed in E. coli, and deletion of chromosomal fosA in S. marcescens eliminated fosfomycin resistance. Our results indicate that FosA is encoded by clinically relevant Gram-negative species and contributes to intrinsic fosfomycin resistance.IMPORTANCE There is a critical need to identify alternate approaches to treat infections caused by extensively drug-resistant (XDR) Gram-negative bacteria. Fosfomycin is an old antibiotic which is routinely used for the treatment of urinary tract infections, although there is substantial interest in expanding its use to systemic infections caused by XDR Gram-negative bacteria. In this study, we show that fosA genes, which encode dimeric Mn2+- and K+-dependent glutathione S-transferase, are widely distributed in the genomes of Gram-negative bacteria-particularly those belonging to the family Enterobacteriaceae-and confer fosfomycin resistance. This finding suggests that chromosomally located fosA genes represent a vast reservoir of fosfomycin resistance determinants that may be transferred to E. coli Furthermore, they suggest that inhibition of FosA activity may provide a viable strategy to potentiate the activity of fosfomycin against XDR Gram-negative bacteria.Entities:
Keywords: Gram negative; fosfomycin resistance; genomics; glutathione S-transferase; phylogenetics
Mesh:
Substances:
Year: 2017 PMID: 28851843 PMCID: PMC5574708 DOI: 10.1128/mBio.00749-17
Source DB: PubMed Journal: mBio Impact factor: 7.867
Distribution of FosA in 18 Gram-negative species
| Species | Total no. of genomes | No. of genomes containing | No. of FosA alleles |
|---|---|---|---|
| 10 | 10 (100) | 5 | |
| 1,631 | 1,626 (99.7) | 104 | |
| 311 | 310 (99.7) | 37 | |
| 2,257 | 2,231 (98.8) | 68 | |
| 122 | 120 (98.4) | 30 | |
| 89 | 86 (96.6) | 30 | |
| 21 | 19 (90.5) | 8 | |
| 7 | 6 (85.7) | 5 | |
| 489 | 403 (82.4) | 144 | |
| 60 | 10 (16.7) | 3 | |
| 5,416 | 533 (9.8) | 17 | |
| 102 | 8 (7.8) | 6 | |
| 5,363 | 246 (4.6) | 22 | |
| 78 | 3 (3.8) | 3 | |
| 1,915 | 39 (2.0) | 9 | |
| 35 | 0 | ||
| 94 | 0 | ||
| 130 | 0 |
Several of the FosA alleles were found in more than one species.
FIG 1 Amino acid alignment of representative chromosomal FosA. Amino acids in boxes represent active site residues. MM, M. morganii; PA, P. aeruginosa; PS, P. stuartii; SM, S. marcescens; EC, E. cloacae; KO, K. oxytoca; KP, K. pneumoniae; EA, E. aerogenes.
FIG 2 Phylogeny of 473 FosA amino acid sequences identified across 15 Gram-negative species. The red bars represent number of genomes with a given FosA sequence in a given species. Bars with frequencies of >300 (*) are truncated for clarity.
Susceptibility of E. coli TOP10 transformants harboring chromosomal fosA from various species
| Transformant | MIC (μg/ml) | Zone diam (mm) | Zone diam with PPF (mm) | Original species | Accession number |
|---|---|---|---|---|---|
| pFosAKP | >1,024 | 6 | 18 | ||
| pFosAEC | >1,024 | 6 | 20 | ||
| pFosAEA | >1,024 | 6 | 16 | ||
| pFosASM | 1,024 | 6 | 14 | ||
| pFosAPA | 16 | 22 | 28 | ||
| pFosAMM | 1,024 | 6 | 16 | ||
| pFosAKO | 1,024 | 6 | 20 | ||
| pFosAPS | >1,024 | 6 | 18 | ||
| 1 | 38 | 38 |
MICs were determined by the agar dilution method supplemented with 25 μg/ml glucose-6-phosphate. For disk testing, 1 mg of sodium phosphonoformate (PPF) was added to fosfomycin disks. The fosA genes were cloned and constitutively expressed on vector pUC57.
List of plasmid-mediated FosA alleles
| FosA allele | Harboring species | Likely species of origin | Accession no. | Reference(s) |
|---|---|---|---|---|
| FosA1 (FosATn | ||||
| FosA2 (FosAEC) | ||||
| FosA3 | Unknown | |||
| FosA4 | Unknown | |||
| FosA5 (FosKP96) | ||||
| FosA6 | ||||
| FosA7 |
FosA2 and FosA7 were reported as chromosomal FosA of E. cloacae and S. enterica serovar Heidelberg but are included here for reference.