Literature DB >> 28830112

Infectious Disease Surveillance in the Big Data Era: Towards Faster and Locally Relevant Systems.

Lone Simonsen1,2, Julia R Gog3, Don Olson1, Cécile Viboud1.   

Abstract

While big data have proven immensely useful in fields such as marketing and earth sciences, public health is still relying on more traditional surveillance systems and awaiting the fruits of a big data revolution. A new generation of big data surveillance systems is needed to achieve rapid, flexible, and local tracking of infectious diseases, especially for emerging pathogens. In this opinion piece, we reflect on the long and distinguished history of disease surveillance and discuss recent developments related to use of big data. We start with a brief review of traditional systems relying on clinical and laboratory reports. We then examine how large-volume medical claims data can, with great spatiotemporal resolution, help elucidate local disease patterns. Finally, we review efforts to develop surveillance systems based on digital and social data streams, including the recent rise and fall of Google Flu Trends. We conclude by advocating for increased use of hybrid systems combining information from traditional surveillance and big data sources, which seems the most promising option moving forward. Throughout the article, we use influenza as an exemplar of an emerging and reemerging infection which has traditionally been considered a model system for surveillance and modeling. Published by Oxford University Press for the Infectious Diseases Society of America 2016. This work is written by (a) US Government employee(s) and is in the public domain in the US.

Entities:  

Keywords:  Internet search queries; big data; death certificates; electronic patient records; infectious diseases surveillance; influenza; medical claims; real-time monitoring; syndromic data

Mesh:

Year:  2016        PMID: 28830112      PMCID: PMC5144901          DOI: 10.1093/infdis/jiw376

Source DB:  PubMed          Journal:  J Infect Dis        ISSN: 0022-1899            Impact factor:   5.226


  38 in total

1.  Innovative surveillance methods for rapid detection of disease outbreaks and bioterrorism: results of an interagency workshop on health indicator surveillance.

Authors:  Julie A Pavlin; Farzad Mostashari; Mark G Kortepeter; Noreen A Hynes; Rashid A Chotani; Yves B Mikol; Margaret A K Ryan; James S Neville; Donald T Gantz; James V Writer; Jared E Florance; Randall C Culpepper; Fred M Henretig; Patrick W Kelley
Journal:  Am J Public Health       Date:  2003-08       Impact factor: 9.308

2.  The signature features of influenza pandemics--implications for policy.

Authors:  Mark A Miller; Cecile Viboud; Marta Balinska; Lone Simonsen
Journal:  N Engl J Med       Date:  2009-05-07       Impact factor: 91.245

3.  Using internet searches for influenza surveillance.

Authors:  Philip M Polgreen; Yiling Chen; David M Pennock; Forrest D Nelson
Journal:  Clin Infect Dis       Date:  2008-12-01       Impact factor: 9.079

4.  Pandemic influenza A(H1N1)v in New Zealand: the experience from April to August 2009.

Authors:  M G Baker; N Wilson; Q S Huang; S Paine; L Lopez; D Bandaranayake; M Tobias; K Mason; G F Mackereth; M Jacobs; C Thornley; S Roberts; C McArthur
Journal:  Euro Surveill       Date:  2009-08-27

5.  Surveillance for the 2009 pandemic influenza A (H1N1) virus and seasonal influenza viruses - New Zealand, 2009.

Authors: 
Journal:  MMWR Morb Mortal Wkly Rep       Date:  2009-08-28       Impact factor: 17.586

6.  Severe respiratory disease concurrent with the circulation of H1N1 influenza.

Authors:  Gerardo Chowell; Stefano M Bertozzi; M Arantxa Colchero; Hugo Lopez-Gatell; Celia Alpuche-Aranda; Mauricio Hernandez; Mark A Miller
Journal:  N Engl J Med       Date:  2009-06-29       Impact factor: 91.245

7.  Mitigation strategies for pandemic influenza in the United States.

Authors:  Timothy C Germann; Kai Kadau; Ira M Longini; Catherine A Macken
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-03       Impact factor: 11.205

8.  Forecast and control of epidemics in a globalized world.

Authors:  L Hufnagel; D Brockmann; T Geisel
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-11       Impact factor: 11.205

9.  Detecting influenza epidemics using search engine query data.

Authors:  Jeremy Ginsberg; Matthew H Mohebbi; Rajan S Patel; Lynnette Brammer; Mark S Smolinski; Larry Brilliant
Journal:  Nature       Date:  2009-02-19       Impact factor: 49.962

10.  Vaccination coverage in children can be estimated from health insurance data.

Authors:  Helen Kalies; Rebekka Redel; Rudolf Varga; Martin Tauscher; Rüdiger von Kries
Journal:  BMC Public Health       Date:  2008-03-01       Impact factor: 3.295

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  35 in total

1.  Big Data for Infectious Disease Surveillance and Modeling.

Authors:  Shweta Bansal; Gerardo Chowell; Lone Simonsen; Alessandro Vespignani; Cécile Viboud
Journal:  J Infect Dis       Date:  2016-12-01       Impact factor: 5.226

2.  Wearable Photoplethysmography for Cardiovascular Monitoring.

Authors:  Peter H Charlton; Panicos A Kyriaco; Jonathan Mant; Vaidotas Marozas; Phil Chowienczyk; Jordi Alastruey
Journal:  Proc IEEE Inst Electr Electron Eng       Date:  2022-03-11       Impact factor: 10.961

3.  Exploring the Relationship among Human Activities, COVID-19 Morbidity, and At-Risk Areas Using Location-Based Social Media Data: Knowledge about the Early Pandemic Stage in Wuhan.

Authors:  Mengyue Yuan; Tong Liu; Chao Yang
Journal:  Int J Environ Res Public Health       Date:  2022-05-27       Impact factor: 4.614

Review 4.  Social Media- and Internet-Based Disease Surveillance for Public Health.

Authors:  Allison E Aiello; Audrey Renson; Paul N Zivich
Journal:  Annu Rev Public Health       Date:  2020-01-06       Impact factor: 21.981

5.  Deploying digital health data to optimize influenza surveillance at national and local scales.

Authors:  Elizabeth C Lee; Ali Arab; Sandra M Goldlust; Cécile Viboud; Bryan T Grenfell; Shweta Bansal
Journal:  PLoS Comput Biol       Date:  2018-03-07       Impact factor: 4.475

Review 6.  Big Data's Role in Precision Public Health.

Authors:  Shawn Dolley
Journal:  Front Public Health       Date:  2018-03-07

7.  A comparison of weather variables linked to infectious disease patterns using laboratory addresses and patient residence addresses.

Authors:  Abdelmajid Djennad; Giovanni Lo Iacono; Christophe Sarran; Lora E Fleming; Anthony Kessel; Andy Haines; Gordon L Nichols
Journal:  BMC Infect Dis       Date:  2018-04-27       Impact factor: 3.090

8.  Data distribution in public veterinary service: health and safety challenges push for context-aware systems.

Authors:  Laura Contalbrigo; Stefano Borgo; Giandomenico Pozza; Stefano Marangon
Journal:  BMC Vet Res       Date:  2017-12-22       Impact factor: 2.741

9.  Time-aggregated mobile phone mobility data are sufficient for modelling influenza spread: the case of Bangladesh.

Authors:  Solveig Engebretsen; Kenth Engø-Monsen; Mohammad Abdul Aleem; Emily Suzanne Gurley; Arnoldo Frigessi; Birgitte Freiesleben de Blasio
Journal:  J R Soc Interface       Date:  2020-06-17       Impact factor: 4.118

10.  Using web search queries to monitor influenza-like illness: an exploratory retrospective analysis, Netherlands, 2017/18 influenza season.

Authors:  Paul P Schneider; Christel Jaw van Gool; Peter Spreeuwenberg; Mariëtte Hooiveld; Gé A Donker; David J Barnett; John Paget
Journal:  Euro Surveill       Date:  2020-05
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