| Literature DB >> 29594091 |
Abstract
Precision public health is an emerging practice to more granularly predict and understand public health risks and customize treatments for more specific and homogeneous subpopulations, often using new data, technologies, and methods. Big data is one element that has consistently helped to achieve these goals, through its ability to deliver to practitioners a volume and variety of structured or unstructured data not previously possible. Big data has enabled more widespread and specific research and trials of stratifying and segmenting populations at risk for a variety of health problems. Examples of success using big data are surveyed in surveillance and signal detection, predicting future risk, targeted interventions, and understanding disease. Using novel big data or big data approaches has risks that remain to be resolved. The continued growth in volume and variety of available data, decreased costs of data capture, and emerging computational methods mean big data success will likely be a required pillar of precision public health into the future. This review article aims to identify the precision public health use cases where big data has added value, identify classes of value that big data may bring, and outline the risks inherent in using big data in precision public health efforts.Entities:
Keywords: big data; computational epidemiology; infectious disease surveillance; precision population health; precision public health
Year: 2018 PMID: 29594091 PMCID: PMC5859342 DOI: 10.3389/fpubh.2018.00068
Source DB: PubMed Journal: Front Public Health ISSN: 2296-2565
Precision public health research leveraging big data.
| Precision public health discipline | ||||
|---|---|---|---|---|
| Public health crisis | Performing disease surveillance and signal detection | Predicting risk | Targeting treatment interventions | Understanding disease |
| Air pollution | ( | ( | ||
| Antibiotic resistance | ( | ( | ||
| Diabetes | ( | ( | ||
| Diarrhea | ( | ( | ||
| Ebola | ( | ( | ||
| HIV | ( | ( | ( | |
| Influenza (multiple) | ( | ( | ( | |
| Malaria | ( | ( | ( | |
| Opioid epidemic | ( | ( | ||
| Zika | ( | ( | ( | |
Research studies (by citation) applying precision with the help of big data to a public health crisis. Public health crises are only included if big data in precision public health examples exist in more than one precision public health discipline.
Potential gaps in research methods in precision public health using big data.
| Precision public health discipline | ||||
|---|---|---|---|---|
| Study attribute | Performing disease surveillance and signal detection | Predicting risk | Targeting treatment interventions | Understanding disease |
| Data | Lack of clinical data, lack of attempt to build data sharing agreements to attain clinical data, or lack of attempt to use other methods to add phenotypic data about subjects No addition of traditional surveillance approach data to test incremental improvement in hybrid approaches | Lack of clinical data, lack of attempt to build data sharing agreements to attain clinical data, or lack of attempt to use other methods to add phenotypic data about subjects Novel determinants may be missed by starting with too narrow a scope Data collected in the coverage area may not be available in other areas | Molecular substrate is missing entirely, or missing within specific ethnicities or other variables Lack of showing positive treatment outcomes | Data identifying more variety or precision in disease or vector etiology is not present when such precision is available/possible Molecular substrate is missing entirely, or missing within specific ethnicities or other variables Lack of adding other variables |
| Subjects | Privacy risks not addressed; as precision increases, subjects could be uniquely identified Children not included, either by design or due to big data constraints | Children not included, either by design or due to big data constraints Lack of “ Lack of data collection from healthy or “healthier” subjects | Privacy risks not addressed; as precision increases, subjects could be uniquely identified Some study or disease types have low “ | Lack of subject precision when such precision or finer-grain subject characterization is available/possible Some study or disease types have low “ |
| Geography | Study was conducted in a city and no design included for applying research approaches to rural areas Limited coverage area No mention of outcomes’ ability to scale outside the study coverage area | Lack of geographical precision when such precision is available/possible Study was conducted in a city and no design included for applying research approaches to rural areas Limited coverage area No mention of outcomes’ ability to scale outside the study coverage area | Lack of plan on how to implement an intervention selectively to a high-risk geographic area or areas Lack of discussion of variability of geographic attributes that affect intervention dynamics Pilots may have been done so precisely that additional pilots in other continents or biomes need to be completed to increase validity | Lack of geographic classification included in the research or lack of geographic precision No concept of geography-as-phenotype; no epigenomic or exposomic component addressed |
| Scaling | Sensor, UAV or other hardware is expensive, or additional hardware is needed Study performed at a country or province level and not scalable to more precise geographies due to limitations of data availability or other factors | Machine learning approach may have been selected No postulates for taking predictions and translating them to actions, such as prevention, intervention, programming or cures | No postulates for taking research findings and translating them to actions, such as prevention, intervention, programming or cures Study may be theoretical or not include an end-to-end pilot implementation Pilot may be missing precision disease understanding that affects long-term outcomes Lack of plan for iterative or long-term follow up | No postulates for taking research findings and translating them to actions, such as prevention, intervention, programming or cures Lack of plan to replicate disease understanding in cohorts that are more random, larger, or more homogeneous/specific |
Critical features sometimes missing from precision public health studies leveraging big data, shown by public health discipline type.