Literature DB >> 28830113

Big Data for Infectious Disease Surveillance and Modeling.

Shweta Bansal1,2, Gerardo Chowell1,3, Lone Simonsen1,4, Alessandro Vespignani5, Cécile Viboud1.   

Abstract

We devote a special issue of the Journal of Infectious Diseases to review the recent advances of big data in strengthening disease surveillance, monitoring medical adverse events, informing transmission models, and tracking patient sentiments and mobility. We consider a broad definition of big data for public health, one encompassing patient information gathered from high-volume electronic health records and participatory surveillance systems, as well as mining of digital traces such as social media, Internet searches, and cell-phone logs. We introduce nine independent contributions to this special issue and highlight several cross-cutting areas that require further research, including representativeness, biases, volatility, and validation, and the need for robust statistical and hypotheses-driven analyses. Overall, we are optimistic that the big-data revolution will vastly improve the granularity and timeliness of available epidemiological information, with hybrid systems augmenting rather than supplanting traditional surveillance systems, and better prospects for accurate infectious diseases models and forecasts. Published by Oxford University Press for the Infectious Diseases Society of America 2016. This work is written by (a) US Government employee(s) and is in the public domain in the US.

Entities:  

Keywords:  Internet search queries; adverse events; big data; disease models; electronic health records; infectious diseases; mobility; outbreaks; social media; surveillance; transmission

Mesh:

Year:  2016        PMID: 28830113      PMCID: PMC5181547          DOI: 10.1093/infdis/jiw400

Source DB:  PubMed          Journal:  J Infect Dis        ISSN: 0022-1899            Impact factor:   5.226


  17 in total

1.  Big data. The parable of Google Flu: traps in big data analysis.

Authors:  David Lazer; Ryan Kennedy; Gary King; Alessandro Vespignani
Journal:  Science       Date:  2014-03-14       Impact factor: 47.728

Review 2.  Participatory Syndromic Surveillance of Influenza in Europe.

Authors:  Caroline Guerrisi; Clément Turbelin; Thierry Blanchon; Thomas Hanslik; Isabelle Bonmarin; Daniel Levy-Bruhl; Daniela Perrotta; Daniela Paolotti; Ronald Smallenburg; Carl Koppeschaar; Ana O Franco; Ricardo Mexia; W John Edmunds; Bersabeh Sile; Richard Pebody; Edward van Straten; Sandro Meloni; Yamir Moreno; Jim Duggan; Charlotte Kjelsø; Vittoria Colizza
Journal:  J Infect Dis       Date:  2016-12-01       Impact factor: 5.226

Review 3.  Connecting Mobility to Infectious Diseases: The Promise and Limits of Mobile Phone Data.

Authors:  Amy Wesolowski; Caroline O Buckee; Kenth Engø-Monsen; C J E Metcalf
Journal:  J Infect Dis       Date:  2016-12-01       Impact factor: 5.226

Review 4.  Lessons from Ebola: Improving infectious disease surveillance to inform outbreak management.

Authors:  Mark E J Woolhouse; Andrew Rambaut; Paul Kellam
Journal:  Sci Transl Med       Date:  2015-09-30       Impact factor: 17.956

Review 5.  Epidemic dynamics at the human-animal interface.

Authors:  James O Lloyd-Smith; Dylan George; Kim M Pepin; Virginia E Pitzer; Juliet R C Pulliam; Andrew P Dobson; Peter J Hudson; Bryan T Grenfell
Journal:  Science       Date:  2009-12-04       Impact factor: 47.728

6.  Detecting influenza epidemics using search engine query data.

Authors:  Jeremy Ginsberg; Matthew H Mohebbi; Rajan S Patel; Lynnette Brammer; Mark S Smolinski; Larry Brilliant
Journal:  Nature       Date:  2009-02-19       Impact factor: 49.962

7.  Assessing vaccination sentiments with online social media: implications for infectious disease dynamics and control.

Authors:  Marcel Salathé; Shashank Khandelwal
Journal:  PLoS Comput Biol       Date:  2011-10-13       Impact factor: 4.475

8.  Combining Search, Social Media, and Traditional Data Sources to Improve Influenza Surveillance.

Authors:  Mauricio Santillana; André T Nguyen; Mark Dredze; Michael J Paul; Elaine O Nsoesie; John S Brownstein
Journal:  PLoS Comput Biol       Date:  2015-10-29       Impact factor: 4.475

Review 9.  Digital Pharmacovigilance and Disease Surveillance: Combining Traditional and Big-Data Systems for Better Public Health.

Authors:  Marcel Salathé
Journal:  J Infect Dis       Date:  2016-12-01       Impact factor: 5.226

10.  Real-time influenza forecasts during the 2012-2013 season.

Authors:  Jeffrey Shaman; Alicia Karspeck; Wan Yang; James Tamerius; Marc Lipsitch
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

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  50 in total

1.  Development of a global infectious disease activity database using natural language processing, machine learning, and human expertise.

Authors:  Joshua Feldman; Andrea Thomas-Bachli; Jack Forsyth; Zaki Hasnain Patel; Kamran Khan
Journal:  J Am Med Inform Assoc       Date:  2019-11-01       Impact factor: 4.497

2.  The future of influenza forecasts.

Authors:  Cécile Viboud; Alessandro Vespignani
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-08       Impact factor: 11.205

3.  A spatial hierarchical model for integrating and bias-correcting data from passive and active disease surveillance systems.

Authors:  Xintong Li; Howard H Chang; Qu Cheng; Philip A Collender; Ting Li; Jinge He; Lance A Waller; Benjamin A Lopman; Justin V Remais
Journal:  Spat Spatiotemporal Epidemiol       Date:  2020-06-10

4.  Trip duration modifies spatial spread of infectious diseases.

Authors:  Andrew W Park
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-24       Impact factor: 11.205

5.  Epidemiology in wonderland: Big Data and precision medicine.

Authors:  Rodolfo Saracci
Journal:  Eur J Epidemiol       Date:  2018-04-05       Impact factor: 8.082

6.  AI Techniques for COVID-19.

Authors:  Adedoyin Ahmed Hussain; Ouns Bouachir; Fadi Al-Turjman; Moayad Aloqaily
Journal:  IEEE Access       Date:  2020-07-08       Impact factor: 3.367

7.  Artificial Intelligence (AI) and Big Data for Coronavirus (COVID-19) Pandemic: A Survey on the State-of-the-Arts.

Authors:  Quoc-Viet Pham; Dinh C Nguyen; Thien Huynh-The; Won-Joo Hwang; Pubudu N Pathirana
Journal:  IEEE Access       Date:  2020-07-15       Impact factor: 3.367

Review 8.  Big Data in Public Health: Terminology, Machine Learning, and Privacy.

Authors:  Stephen J Mooney; Vikas Pejaver
Journal:  Annu Rev Public Health       Date:  2017-12-20       Impact factor: 21.981

Review 9.  Social Media- and Internet-Based Disease Surveillance for Public Health.

Authors:  Allison E Aiello; Audrey Renson; Paul N Zivich
Journal:  Annu Rev Public Health       Date:  2020-01-06       Impact factor: 21.981

10.  Effects of Scale on Modeling West Nile Virus Disease Risk.

Authors:  Johnny A Uelmen; Patrick Irwin; Dan Bartlett; William Brown; Surendra Karki; Marilyn O'Hara Ruiz; Jennifer Fraterrigo; Bo Li; Rebecca L Smith
Journal:  Am J Trop Med Hyg       Date:  2021-01       Impact factor: 3.707

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