Literature DB >> 28816655

Gaussian Process Morphable Models.

Marcel Luthi, Thomas Gerig, Christoph Jud, Thomas Vetter.   

Abstract

Models of shape variations have become a central component for the automated analysis of images. An important class of shape models are point distribution models (PDMs). These models represent a class of shapes as a normal distribution of point variations, whose parameters are estimated from example shapes. Principal component analysis (PCA) is applied to obtain a low-dimensional representation of the shape variation in terms of the leading principal components. In this paper, we propose a generalization of PDMs, which we refer to as Gaussian Process Morphable Models (GPMMs). We model the shape variations with a Gaussian process, which we represent using the leading components of its Karhunen-Loève expansion. To compute the expansion, we make use of an approximation scheme based on the Nyström method. The resulting model can be seen as a continuous analog of a standard PDM. However, while for PDMs the shape variation is restricted to the linear span of the example data, with GPMMs we can define the shape variation using any Gaussian process. For example, we can build shape models that correspond to classical spline models and thus do not require any example data. Furthermore, Gaussian processes make it possible to combine different models. For example, a PDM can be extended with a spline model, to obtain a model that incorporates learned shape characteristics but is flexible enough to explain shapes that cannot be represented by the PDM. We introduce a simple algorithm for fitting a GPMM to a surface or image. This results in a non-rigid registration approach whose regularization properties are defined by a GPMM. We show how we can obtain different registration schemes, including methods for multi-scale or hybrid registration, by constructing an appropriate GPMM. As our approach strictly separates modeling from the fitting process, this is all achieved without changes to the fitting algorithm. To demonstrate the applicability and versatility of GPMMs, we perform a set of experiments in typical usage scenarios in medical image analysis and computer vision: The model-based segmentation of 3D forearm images and the building of a statistical model of the face. To complement the paper, we have made all our methods available as open source.

Year:  2017        PMID: 28816655     DOI: 10.1109/TPAMI.2017.2739743

Source DB:  PubMed          Journal:  IEEE Trans Pattern Anal Mach Intell        ISSN: 0098-5589            Impact factor:   6.226


  10 in total

1.  Quasi-automatic 3D reconstruction of the full spine from low-dose biplanar X-rays based on statistical inferences and image analysis.

Authors:  Laurent Gajny; Shahin Ebrahimi; Claudio Vergari; Elsa Angelini; Wafa Skalli
Journal:  Eur Spine J       Date:  2018-10-31       Impact factor: 3.134

2.  A Deep Invertible 3-D Facial Shape Model for Interpretable Genetic Syndrome Diagnosis.

Authors:  Jordan J Bannister; Matthias Wilms; J David Aponte; David C Katz; Ophir D Klein; Francois P J Bernier; Richard A Spritz; Benedikt Hallgrimsson; Nils D Forkert
Journal:  IEEE J Biomed Health Inform       Date:  2022-07-01       Impact factor: 7.021

3.  Anatomical fitting of a plate shape directly derived from a 3D statistical bone model of the tibia.

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Journal:  J Clin Orthop Trauma       Date:  2019-04-25

4.  Fracture reduction planning and guidance in orthopaedic trauma surgery via multi-body image registration.

Authors:  R Han; A Uneri; R C Vijayan; P Wu; P Vagdargi; N Sheth; S Vogt; G Kleinszig; G M Osgood; J H Siewerdsen
Journal:  Med Image Anal       Date:  2020-11-30       Impact factor: 13.828

5.  Fully Automatic Landmarking of Syndromic 3D Facial Surface Scans Using 2D Images.

Authors:  Jordan J Bannister; Sebastian R Crites; J David Aponte; David C Katz; Matthias Wilms; Ophir D Klein; Francois P J Bernier; Richard A Spritz; Benedikt Hallgrímsson; Nils D Forkert
Journal:  Sensors (Basel)       Date:  2020-06-03       Impact factor: 3.576

6.  A Bayesian approach to beam-induced motion correction in cryo-EM single-particle analysis.

Authors:  Jasenko Zivanov; Takanori Nakane; Sjors H W Scheres
Journal:  IUCrJ       Date:  2019-01-01       Impact factor: 4.769

7.  Reconstruction of knee anatomy from single-plane fluoroscopic x-ray based on a nonlinear statistical shape model.

Authors:  Jing Wu; Mohamed R Mahfouz
Journal:  J Med Imaging (Bellingham)       Date:  2021-01-11

Review 8.  Statistical Shape and Appearance Models: Development Towards Improved Osteoporosis Care.

Authors:  Lorenzo Grassi; Sami P Väänänen; Hanna Isaksson
Journal:  Curr Osteoporos Rep       Date:  2021-11-13       Impact factor: 5.096

9.  A Radiation-Free Classification Pipeline for Craniosynostosis Using Statistical Shape Modeling.

Authors:  Matthias Schaufelberger; Reinald Kühle; Andreas Wachter; Frederic Weichel; Niclas Hagen; Friedemann Ringwald; Urs Eisenmann; Jürgen Hoffmann; Michael Engel; Christian Freudlsperger; Werner Nahm
Journal:  Diagnostics (Basel)       Date:  2022-06-21

10.  Monocular 3D Body Shape Reconstruction under Clothing.

Authors:  Claudio Ferrari; Leonardo Casini; Stefano Berretti; Alberto Del Bimbo
Journal:  J Imaging       Date:  2021-11-30
  10 in total

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