Literature DB >> 35380975

A Deep Invertible 3-D Facial Shape Model for Interpretable Genetic Syndrome Diagnosis.

Jordan J Bannister, Matthias Wilms, J David Aponte, David C Katz, Ophir D Klein, Francois P J Bernier, Richard A Spritz, Benedikt Hallgrimsson, Nils D Forkert.   

Abstract

One of the primary difficulties in treating patients with genetic syndromes is diagnosing their condition. Many syndromes are associated with characteristic facial features that can be imaged and utilized by computer-assisted diagnosis systems. In this work, we develop a novel 3D facial surface modeling approach with the objective of maximizing diagnostic model interpretability within a flexible deep learning framework. Therefore, an invertible normalizing flow architecture is introduced to enable both inferential and generative tasks in a unified and efficient manner. The proposed model can be used (1) to infer syndrome diagnosis and other demographic variables given a 3D facial surface scan and (2) to explain model inferences to non-technical users via multiple interpretability mechanisms. The model was trained and evaluated on more than 4700 facial surface scans from subjects with 47 different syndromes. For the challenging task of predicting syndrome diagnosis given a new 3D facial surface scan, age, and sex of a subject, the model achieves a competitive overall top-1 accuracy of 71%, and a mean sensitivity of 43% across all syndrome classes. We believe that invertible models such as the one presented in this work can achieve competitive inferential performance while greatly increasing model interpretability in the domain of medical diagnosis.

Entities:  

Mesh:

Year:  2022        PMID: 35380975      PMCID: PMC9429803          DOI: 10.1109/JBHI.2022.3164848

Source DB:  PubMed          Journal:  IEEE J Biomed Health Inform        ISSN: 2168-2194            Impact factor:   7.021


  13 in total

1.  Automated syndrome detection in a set of clinical facial photographs.

Authors:  Stefan Boehringer; Manuel Guenther; Stella Sinigerova; Rolf P Wurtz; Bernhard Horsthemke; Dagmar Wieczorek
Journal:  Am J Med Genet A       Date:  2011-08-03       Impact factor: 2.802

Review 2.  Large-scale objective phenotyping of 3D facial morphology.

Authors:  Peter Hammond; Michael Suttie
Journal:  Hum Mutat       Date:  2012-03-20       Impact factor: 4.878

3.  Normalizing Flows: An Introduction and Review of Current Methods.

Authors:  Ivan Kobyzev; Simon Prince; Marcus Brubaker
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2020-05-07       Impact factor: 6.226

4.  Conditional variability of statistical shape models based on surrogate variables.

Authors:  Rémi Blanc; Mauricio Reyes; Christof Seiler; Gábor Székely
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

Review 5.  Genetic studies of craniofacial anomalies: clinical implications and applications.

Authors:  T C Hart; P S Hart
Journal:  Orthod Craniofac Res       Date:  2009-08       Impact factor: 1.826

6.  A Survey on Computer Vision for Assistive Medical Diagnosis From Faces.

Authors:  Jerome Thevenot; Miguel Bordallo Lopez; Abdenour Hadid
Journal:  IEEE J Biomed Health Inform       Date:  2017-10-05       Impact factor: 5.772

7.  Digital facial dysmorphology for genetic screening: Hierarchical constrained local model using ICA.

Authors:  Qian Zhao; Kazunori Okada; Kenneth Rosenbaum; Lindsay Kehoe; Dina J Zand; Raymond Sze; Marshall Summar; Marius George Linguraru
Journal:  Med Image Anal       Date:  2014-04-15       Impact factor: 8.545

8.  Large Scale 3D Morphable Models.

Authors:  James Booth; Anastasios Roussos; Allan Ponniah; David Dunaway; Stefanos Zafeiriou
Journal:  Int J Comput Vis       Date:  2017-04-08       Impact factor: 7.410

9.  Automated syndrome diagnosis by three-dimensional facial imaging.

Authors:  J David Aponte; David C Katz; Jordan J Bannister; Benedikt Hallgrímsson; Sheri L Riccardi; Nick Mahasuwan; Brenda L McInnes; Tracey M Ferrara; Danika M Lipman; Amanda B Neves; Jared A J Spitzmacher; Jacinda R Larson; Gary A Bellus; Anh M Pham; Elias Aboujaoude; Timothy A Benke; Kathryn C Chatfield; Shanlee M Davis; Ellen R Elias; Robert W Enzenauer; Brooke M French; Laura L Pickler; Joseph T C Shieh; Anne Slavotinek; A Robertson Harrop; A Micheil Innes; Shawn E McCandless; Emily A McCourt; Naomi J L Meeks; Nicole R Tartaglia; Anne C-H Tsai; J Patrick H Wyse; Jonathan A Bernstein; Pedro A Sanchez-Lara; Nils D Forkert; Francois P Bernier; Richard A Spritz; Ophir D Klein
Journal:  Genet Med       Date:  2020-06-01       Impact factor: 8.822

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