Literature DB >> 28814654

The complex effects of demographic history on the estimation of substitution rate: concatenated gene analysis results in no more than twofold overestimation.

Christopher H Martin1, Sebastian Höhna2,3,4, Jacob E Crawford2, Bruce J Turner5, Emilie J Richards6, Lee H Simons7.   

Abstract

Mesh：

Year:  2017        PMID： 28814654      PMCID： PMC5563795          DOI： 10.1098/rspb.2017.0537

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN： 0962-8452            Impact factor:   5.349


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  23 in total

Review 1.  Mutation rate variation in multicellular eukaryotes: causes and consequences.

Authors:  Charles F Baer; Michael M Miyamoto; Dee R Denver
Journal:  Nat Rev Genet       Date:  2007-08       Impact factor: 53.242

2.  Complex histories of repeated gene flow in Cameroon crater lake cichlids cast doubt on one of the clearest examples of sympatric speciation.

Authors:  Christopher H Martin; Joseph S Cutler; John P Friel; Cyrille Dening Touokong; Graham Coop; Peter C Wainwright
Journal:  Evolution       Date:  2015-06-09       Impact factor: 3.694

3.  Novel Candidate Genes Underlying Extreme Trophic Specialization in Caribbean Pupfishes.

Authors:  Joseph A McGirr; Christopher H Martin
Journal:  Mol Biol Evol       Date:  2017-04-01       Impact factor: 16.240

4.  RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling.

Authors:  B Arnold; R B Corbett-Detig; D Hartl; K Bomblies
Journal:  Mol Ecol       Date:  2013-04-03       Impact factor: 6.185

5.  Unforeseen Consequences of Excluding Missing Data from Next-Generation Sequences: Simulation Study of RAD Sequences.

Authors:  Huateng Huang; L Lacey Knowles
Journal:  Syst Biol       Date:  2014-07-04       Impact factor: 15.683

6.  New evidence for the recent divergence of Devil's Hole pupfish and the plausibility of elevated mutation rates in endangered taxa.

Authors:  Christopher H Martin; Sebastian Höhna
Journal:  Mol Ecol       Date:  2017-11-28       Impact factor: 6.185

7.  Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype.

Authors:  Olivier Jaillon; Jean-Marc Aury; Frédéric Brunet; Jean-Louis Petit; Nicole Stange-Thomann; Evan Mauceli; Laurence Bouneau; Cécile Fischer; Catherine Ozouf-Costaz; Alain Bernot; Sophie Nicaud; David Jaffe; Sheila Fisher; Georges Lutfalla; Carole Dossat; Béatrice Segurens; Corinne Dasilva; Marcel Salanoubat; Michael Levy; Nathalie Boudet; Sergi Castellano; Véronique Anthouard; Claire Jubin; Vanina Castelli; Michael Katinka; Benoît Vacherie; Christian Biémont; Zineb Skalli; Laurence Cattolico; Julie Poulain; Véronique De Berardinis; Corinne Cruaud; Simone Duprat; Philippe Brottier; Jean-Pierre Coutanceau; Jérôme Gouzy; Genis Parra; Guillaume Lardier; Charles Chapple; Kevin J McKernan; Paul McEwan; Stephanie Bosak; Manolis Kellis; Jean-Nicolas Volff; Roderic Guigó; Michael C Zody; Jill Mesirov; Kerstin Lindblad-Toh; Bruce Birren; Chad Nusbaum; Daniel Kahn; Marc Robinson-Rechavi; Vincent Laudet; Vincent Schachter; Francis Quétier; William Saurin; Claude Scarpelli; Patrick Wincker; Eric S Lander; Jean Weissenbach; Hugues Roest Crollius
Journal:  Nature       Date:  2004-10-21       Impact factor: 49.962

8.  Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears.

Authors:  Shiping Liu; Eline D Lorenzen; Matteo Fumagalli; Bo Li; Kelley Harris; Zijun Xiong; Long Zhou; Thorfinn Sand Korneliussen; Mehmet Somel; Courtney Babbitt; Greg Wray; Jianwen Li; Weiming He; Zhuo Wang; Wenjing Fu; Xueyan Xiang; Claire C Morgan; Aoife Doherty; Mary J O'Connell; James O McInerney; Erik W Born; Love Dalén; Rune Dietz; Ludovic Orlando; Christian Sonne; Guojie Zhang; Rasmus Nielsen; Eske Willerslev; Jun Wang
Journal:  Cell       Date:  2014-05-08       Impact factor: 41.582

9.  Relative influences of historical and contemporary forces shaping the distribution of genetic variation in the Atlantic killifish, Fundulus heteroclitus.

Authors:  David D Duvernell; James B Lindmeier; Katherine E Faust; Andrew Whitehead
Journal:  Mol Ecol       Date:  2008-03       Impact factor: 6.185

10.  Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data.

Authors:  Ryan N Gutenkunst; Ryan D Hernandez; Scott H Williamson; Carlos D Bustamante
Journal:  PLoS Genet       Date:  2009-10-23       Impact factor: 5.917
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  2 in total

1.  Long-distance dispersal over land by fishes: extremely rare ecological events become probable over millennial timescales.

Authors:  Christopher H Martin; Bruce J Turner
Journal:  Proc Biol Sci       Date:  2018-06-27       Impact factor: 5.349

2.  The paradox behind the pattern of rapid adaptive radiation: how can the speciation process sustain itself through an early burst?

Authors:  Christopher H Martin; Emilie J Richards
Journal:  Annu Rev Ecol Evol Syst       Date:  2019-10-01       Impact factor: 14.340
  2 in total

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