Literature DB >> 28814606

Their loss is our gain: regressive evolution in vertebrates provides genomic models for uncovering human disease loci.

Christopher A Emerling1,2, Andrew D Widjaja3,4, Nancy N Nguyen5,6, Mark S Springer2.   

Abstract

Throughout Earth's history, evolution's numerous natural 'experiments' have resulted in a diverse range of phenotypes. Though de novo phenotypes receive widespread attention, degeneration of traits inherited from an ancestor is a very common, yet frequently neglected, evolutionary path. The latter phenomenon, known as regressive evolution, often results in vertebrates with phenotypes that mimic inherited disease states in humans. Regressive evolution of anatomical and/or physiological traits is typically accompanied by inactivating mutations underlying these traits, which frequently occur at loci identical to those implicated in human diseases. Here we discuss the potential utility of examining the genomes of vertebrates that have experienced regressive evolution to inform human medical genetics. This approach is low cost and high throughput, giving it the potential to rapidly improve knowledge of disease genetics. We discuss two well-described examples, rod monochromacy (congenital achromatopsia) and amelogenesis imperfecta, to demonstrate the utility of this approach, and then suggest methods to equip non-experts with the ability to corroborate candidate genes and uncover new disease loci. © Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2017. All rights reserved. No commercial use is permitted unless otherwise expressly granted.

Entities:  

Keywords:  amelogenesis imperfecta; phylomedicine; pseudogenes; regressive evolution; rod monochromacy

Mesh:

Year:  2017        PMID: 28814606     DOI: 10.1136/jmedgenet-2017-104837

Source DB:  PubMed          Journal:  J Med Genet        ISSN: 0022-2593            Impact factor:   6.318


  12 in total

1.  Functional, Morphological, and Evolutionary Characterization of Hearing in Subterranean, Eusocial African Mole-Rats.

Authors:  Sonja J Pyott; Marcel van Tuinen; Laurel A Screven; Katrina M Schrode; Jun-Ping Bai; Catherine M Barone; Steven D Price; Anna Lysakowski; Maxwell Sanderford; Sudhir Kumar; Joseph Santos-Sacchi; Amanda M Lauer; Thomas J Park
Journal:  Curr Biol       Date:  2020-09-03       Impact factor: 10.834

2.  PseudoChecker: an integrated online platform for gene inactivation inference.

Authors:  Luís Q Alves; Raquel Ruivo; Miguel M Fonseca; Mónica Lopes-Marques; Pedro Ribeiro; L Filipe C Castro
Journal:  Nucleic Acids Res       Date:  2020-07-02       Impact factor: 16.971

3.  A fully-automated method discovers loss of mouse-lethal and human-monogenic disease genes in 58 mammals.

Authors:  Yatish Turakhia; Heidi I Chen; Amir Marcovitz; Gill Bejerano
Journal:  Nucleic Acids Res       Date:  2020-09-18       Impact factor: 16.971

4.  Emerging Frontiers in the Study of Molecular Evolution.

Authors:  David A Liberles; Belinda Chang; Kerry Geiler-Samerotte; Aaron Goldman; Jody Hey; Betül Kaçar; Michelle Meyer; William Murphy; David Posada; Andrew Storfer
Journal:  J Mol Evol       Date:  2020-04       Impact factor: 2.395

5.  Functional or Vestigial? The Genomics of the Pineal Gland in Xenarthra.

Authors:  Raul Valente; Filipe Alves; Isabel Sousa-Pinto; Raquel Ruivo; L Filipe C Castro
Journal:  J Mol Evol       Date:  2021-08-03       Impact factor: 2.395

6.  Cetacea are natural knockouts for IL20.

Authors:  Mónica Lopes-Marques; André M Machado; Susana Barbosa; Miguel M Fonseca; Raquel Ruivo; L Filipe C Castro
Journal:  Immunogenetics       Date:  2018-07-12       Impact factor: 2.846

7.  Multifactorial processes underlie parallel opsin loss in neotropical bats.

Authors:  Alexa Sadier; Kalina Tj Davies; Laurel R Yohe; Kun Yun; Paul Donat; Brandon P Hedrick; Elizabeth R Dumont; Liliana M Dávalos; Stephen J Rossiter; Karen E Sears
Journal:  Elife       Date:  2018-12-18       Impact factor: 8.713

8.  Odontogenic ameloblast-associated (ODAM) is inactivated in toothless/enamelless placental mammals and toothed whales.

Authors:  Mark S Springer; Christopher A Emerling; John Gatesy; Jason Randall; Matthew A Collin; Nikolai Hecker; Michael Hiller; Frédéric Delsuc
Journal:  BMC Evol Biol       Date:  2019-01-23       Impact factor: 3.260

9.  The dopamine receptor D5 gene shows signs of independent erosion in toothed and baleen whales.

Authors:  Luís Q Alves; Juliana Alves; Rodrigo Ribeiro; Raquel Ruivo; Filipe Castro
Journal:  PeerJ       Date:  2019-10-11       Impact factor: 2.984

10.  Recapitulating Evolutionary Divergence in a Single Cis-Regulatory Element Is Sufficient to Cause Expression Changes of the Lens Gene Tdrd7.

Authors:  Juliana G Roscito; Kaushikaram Subramanian; Ronald Naumann; Mihail Sarov; Anna Shevchenko; Aliona Bogdanova; Thomas Kurth; Leo Foerster; Moritz Kreysing; Michael Hiller
Journal:  Mol Biol Evol       Date:  2021-01-23       Impact factor: 16.240

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