Literature DB >> 28813152

Coherent Exciton Delocalization in a Two-State DNA-Templated Dye Aggregate System.

Brittany L Cannon1, Donald L Kellis1, Lance K Patten1, Paul H Davis1, Jeunghoon Lee1, Elton Graugnard1, Bernard Yurke1, William B Knowlton1.   

Abstract

Coherent exciton delocalization in dye aggregate systems gives rise to a variety of intriguing optical phenomena, including J- and H-aggregate behavior and Davydov splitting. Systems that exhibit coherent exciton delocalization at room temperature are of interest for the development of artificial light-harvesting devices, colorimetric detection schemes, and quantum computers. Here, we report on a simple dye system templated by DNA that exhibits tunable optical properties. At low salt and DNA concentrations, a DNA duplex with two internally functionalized Cy5 dyes (i.e., dimer) persists and displays predominantly J-aggregate behavior. Increasing the salt and/or DNA concentrations was found to promote coupling between two of the DNA duplexes via branch migration, thus forming a four-armed junction (i.e., tetramer) with H-aggregate behavior. This H-tetramer aggregate exhibits a surprisingly large Davydov splitting in its absorbance spectrum that produces a visible color change of the solution from cyan to violet and gives clear evidence of coherent exciton delocalization.

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Year:  2017        PMID: 28813152      PMCID: PMC6705113          DOI: 10.1021/acs.jpca.7b04344

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  52 in total

1.  Motional Narrowing in Semiconductor Microcavities.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-12-02       Impact factor: 9.161

2.  Direct evidence for spontaneous branch migration in antiparallel DNA Holliday junctions.

Authors:  R Sha; F Liu; N C Seeman
Journal:  Biochemistry       Date:  2000-09-19       Impact factor: 3.162

3.  DNA-dye conjugates for controllable H aggregation(1).

Authors:  Hiroyuki Asanuma; Kenji Shirasuka; Tohru Takarada; Hiromu Kashida; Makoto Komiyama
Journal:  J Am Chem Soc       Date:  2003-02-26       Impact factor: 15.419

4.  ENERGY TRANSFER MECHANISMS AND THE MOLECULAR EXCITON MODEL FOR MOLECULAR AGGREGATES.

Authors:  M KASHA
Journal:  Radiat Res       Date:  1963-09       Impact factor: 2.841

5.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

6.  Temperature-dependent superradiant decay of excitons in small aggregates.

Authors: 
Journal:  Phys Rev Lett       Date:  1990-07-09       Impact factor: 9.161

7.  Kinetics of branch migration in double-stranded DNA.

Authors:  B J Thompson; M N Camien; R C Warner
Journal:  Proc Natl Acad Sci U S A       Date:  1976-07       Impact factor: 11.205

8.  DNA-templated assembly of helical cyanine dye aggregates: a supramolecular chain polymerization.

Authors:  Kristen C Hannah; Bruce A Armitage
Journal:  Acc Chem Res       Date:  2004-11       Impact factor: 22.384

9.  DNA recombination: holliday junctions dynamics and branch migration.

Authors:  Alexander Y Lushnikov; Alexey Bogdanov; Yuri L Lyubchenko
Journal:  J Biol Chem       Date:  2003-08-29       Impact factor: 5.157

10.  Covalent incorporation of methyl red dyes into double-stranded DNA for their ordered clustering.

Authors:  Hiromu Kashida; Masayuki Tanaka; Seiki Baba; Taiichi Sakamoto; Gota Kawai; Hiroyuki Asanuma; Makoto Komiyama
Journal:  Chemistry       Date:  2006-01-11       Impact factor: 5.236

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  15 in total

1.  Tunable Electronic Structure via DNA-Templated Heteroaggregates of Two Distinct Cyanine Dyes.

Authors:  Jonathan S Huff; Sebastián A Díaz; Matthew S Barclay; Azhad U Chowdhury; Matthew Chiriboga; Gregory A Ellis; Divita Mathur; Lance K Patten; Simon K Roy; Aaron Sup; Austin Biaggne; Brian S Rolczynski; Paul D Cunningham; Lan Li; Jeunghoon Lee; Paul H Davis; Bernard Yurke; William B Knowlton; Igor L Medintz; Daniel B Turner; Joseph S Melinger; Ryan D Pensack
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2022-09-28       Impact factor: 4.177

2.  Rotaxane rings promote oblique packing and extended lifetimes in DNA-templated molecular dye aggregates.

Authors:  Matthew S Barclay; Simon K Roy; Jonathan S Huff; Olga A Mass; Daniel B Turner; Christopher K Wilson; Donald L Kellis; Ewald A Terpetschnig; Jeunghoon Lee; Paul H Davis; Bernard Yurke; William B Knowlton; Ryan D Pensack
Journal:  Commun Chem       Date:  2021-02-18

3.  Understanding Förster Resonance Energy Transfer in the Sheet Regime with DNA Brick-Based Dye Networks.

Authors:  Divita Mathur; Anirban Samanta; Mario G Ancona; Sebastián A Díaz; Youngchan Kim; Joseph S Melinger; Ellen R Goldman; John Paul Sadowski; Luvena L Ong; Peng Yin; Igor L Medintz
Journal:  ACS Nano       Date:  2021-10-05       Impact factor: 15.881

4.  Substituent Effects on the Solubility and Electronic Properties of the Cyanine Dye Cy5: Density Functional and Time-Dependent Density Functional Theory Calculations.

Authors:  Austin Biaggne; William B Knowlton; Bernard Yurke; Jeunghoon Lee; Lan Li
Journal:  Molecules       Date:  2021-01-20       Impact factor: 4.411

5.  Exciton Delocalization and Scaffold Stability in Bridged Nucleotide-Substituted, DNA Duplex-Templated Cyanine Aggregates.

Authors:  Simon K Roy; Olga A Mass; Donald L Kellis; Christopher K Wilson; John A Hall; Bernard Yurke; William B Knowlton
Journal:  J Phys Chem B       Date:  2021-12-13       Impact factor: 2.991

6.  Exciton Delocalization in a DNA-Templated Organic Semiconductor Dimer Assembly.

Authors:  Xiao Wang; Ruojie Sha; William B Knowlton; Nadrian C Seeman; James W Canary; Bernard Yurke
Journal:  ACS Nano       Date:  2022-01-03       Impact factor: 15.881

7.  Tuning between Quenching and Energy Transfer in DNA-Templated Heterodimer Aggregates.

Authors:  Azhad U Chowdhury; Sebastián A Díaz; Jonathan S Huff; Matthew S Barclay; Matthew Chiriboga; Gregory A Ellis; Divita Mathur; Lance K Patten; Aaron Sup; Natalya Hallstrom; Paul D Cunningham; Jeunghoon Lee; Paul H Davis; Daniel B Turner; Bernard Yurke; William B Knowlton; Igor L Medintz; Joseph S Melinger; Ryan D Pensack
Journal:  J Phys Chem Lett       Date:  2022-03-23       Impact factor: 6.475

8.  Synthesis of Substituted Cy5 Phosphoramidite Derivatives and Their Incorporation into Oligonucleotides Using Automated DNA Synthesis.

Authors:  Adam Meares; Kimihiro Susumu; Divita Mathur; Sang Ho Lee; Olga A Mass; Jeunghoon Lee; Ryan D Pensack; Bernard Yurke; William B Knowlton; Joseph S Melinger; Igor L Medintz
Journal:  ACS Omega       Date:  2022-03-22

9.  Influence of Hydrophobicity on Excitonic Coupling in DNA-Templated Indolenine Squaraine Dye Aggregates.

Authors:  Olga A Mass; Christopher K Wilson; German Barcenas; Ewald A Terpetschnig; Olena M Obukhova; Olga S Kolosova; Anatoliy L Tatarets; Lan Li; Bernard Yurke; William B Knowlton; Ryan D Pensack; Jeunghoon Lee
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2022-02-10       Impact factor: 4.126

10.  First-principles studies of substituent effects on squaraine dyes.

Authors:  German Barcenas; Austin Biaggne; Olga A Mass; Christopher K Wilson; Olena M Obukhova; Olga S Kolosova; Anatoliy L Tatarets; Ewald Terpetschnig; Ryan D Pensack; Jeunghoon Lee; William B Knowlton; Bernard Yurke; Lan Li
Journal:  RSC Adv       Date:  2021-05-26       Impact factor: 4.036

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