Literature DB >> 28809115

An Intuitive Approach for Predicting Potential Human Health Risk with the Tox21 10k Library.

Nisha S Sipes1, John F Wambaugh2, Robert Pearce2, Scott S Auerbach1, Barbara A Wetmore3, Jui-Hua Hsieh4, Andrew J Shapiro1, Daniel Svoboda5, Michael J DeVito1, Stephen S Ferguson1.   

Abstract

In vitro-in vivo extrapolation (IVIVE) analyses translating high-throughput screening (HTS) data to human relevance have been limited. This study represents the first report applying IVIVE approaches and exposure comparisons using the entirety of the Tox21 federal collaboration chemical screening data, incorporating assay response efficacy and quality of concentration-response fits, and providing quantitative anchoring to first address the likelihood of human in vivo interactions with Tox21 compounds. This likelihood was assessed using a maximum blood concentration to in vitro response ratio approach (Cmax/AC50), analogous to decision-making methods for clinical drug-drug interactions. Fraction unbound in plasma (fup) and intrinsic hepatic clearance (CLint) parameters were estimated in silico and incorporated in a three-compartment toxicokinetic (TK) model to first predict Cmax for in vivo corroboration using therapeutic scenarios. Toward lower exposure scenarios, 36 compounds of 3925 unique chemicals with curated activity in the HTS data using high-quality dose-response model fits and ≥40% efficacy gave "possible" human in vivo interaction likelihoods lower than median human exposures predicted in the United States Environmental Protection Agency's ExpoCast program. A publicly available web application has been designed to provide all Tox21-ToxCast dose-likelihood predictions. Overall, this approach provides an intuitive framework to relate in vitro toxicology data rapidly and quantitatively to exposures using either in vitro or in silico derived TK parameters and can be thought of as an important step toward estimating plausible biological interactions in a high-throughput risk-assessment framework.

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Year:  2017        PMID: 28809115      PMCID: PMC5657440          DOI: 10.1021/acs.est.7b00650

Source DB:  PubMed          Journal:  Environ Sci Technol        ISSN: 0013-936X            Impact factor:   9.028


  58 in total

1.  Prediction of human clearance of twenty-nine drugs from hepatic microsomal intrinsic clearance data: An examination of in vitro half-life approach and nonspecific binding to microsomes.

Authors:  R S Obach
Journal:  Drug Metab Dispos       Date:  1999-11       Impact factor: 3.922

2.  Commentary: a physiological approach to hepatic drug clearance.

Authors:  G R Wilkinson; D G Shand
Journal:  Clin Pharmacol Ther       Date:  1975-10       Impact factor: 6.875

3.  Comparison of the use of liver models for predicting drug clearance using in vitro kinetic data from hepatic microsomes and isolated hepatocytes.

Authors:  Kiyomi Ito; J Brian Houston
Journal:  Pharm Res       Date:  2004-05       Impact factor: 4.200

4.  Evaluation of fresh and cryopreserved hepatocytes as in vitro drug metabolism tools for the prediction of metabolic clearance.

Authors:  Dermot F McGinnity; Matthew G Soars; Richard A Urbanowicz; Robert J Riley
Journal:  Drug Metab Dispos       Date:  2004-07-30       Impact factor: 3.922

5.  Development of a large-scale chemogenomics database to improve drug candidate selection and to understand mechanisms of chemical toxicity and action.

Authors:  Brigitte Ganter; Stuart Tugendreich; Cecelia I Pearson; Eser Ayanoglu; Susanne Baumhueter; Keith A Bostian; Lindsay Brady; Leslie J Browne; John T Calvin; Gwo-Jen Day; Naiomi Breckenridge; Shane Dunlea; Barrett P Eynon; L Mike Furness; Joe Ferng; Mark R Fielden; Susan Y Fujimoto; Li Gong; Christopher Hu; Radha Idury; Michael S B Judo; Kyle L Kolaja; May D Lee; Christopher McSorley; James M Minor; Ramesh V Nair; Georges Natsoulis; Peter Nguyen; Simone M Nicholson; Hang Pham; Alan H Roter; Dongxu Sun; Siqi Tan; Silke Thode; Alexander M Tolley; Antoaneta Vladimirova; Jian Yang; Zhiming Zhou; Kurt Jarnagin
Journal:  J Biotechnol       Date:  2005-09-29       Impact factor: 3.307

6.  Estimating liver weight of adults by body weight and gender.

Authors:  See Ching Chan; Chi Leung Liu; Chung Mau Lo; Banny K Lam; Evelyn W Lee; Yik Wong; Sheung Tat Fan
Journal:  World J Gastroenterol       Date:  2006-04-14       Impact factor: 5.742

7.  Development of a novel in vitro model to predict hepatic clearance using fresh, cryopreserved, and sandwich-cultured hepatocytes.

Authors:  Yau Yi Lau; Elpida Sapidou; Xiaoming Cui; Ronald E White; K-C Cheng
Journal:  Drug Metab Dispos       Date:  2002-12       Impact factor: 3.922

8.  Prediction of hepatic clearance and availability by cryopreserved human hepatocytes: an application of serum incubation method.

Authors:  Yoshihiro Shibata; Hiroyuki Takahashi; Masato Chiba; Yasuyuki Ishii
Journal:  Drug Metab Dispos       Date:  2002-08       Impact factor: 3.922

9.  Utility of hepatocytes in predicting drug metabolism: comparison of hepatic intrinsic clearance in rats and humans in vivo and in vitro.

Authors:  Yoichi Naritomi; Shigeyuki Terashita; Akira Kagayama; Yuichi Sugiyama
Journal:  Drug Metab Dispos       Date:  2003-05       Impact factor: 3.922

10.  Cytochrome c release and mitochondria involvement in programmed cell death induced by acetic acid in Saccharomyces cerevisiae.

Authors:  Paula Ludovico; Fernando Rodrigues; Agostinho Almeida; Manuel T Silva; Antoni Barrientos; Manuela Côrte-Real
Journal:  Mol Biol Cell       Date:  2002-08       Impact factor: 4.138

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  40 in total

1.  Determination of chemical-disease risk values to prioritize connections between environmental factors, genetic variants, and human diseases.

Authors:  Marissa B Kosnik; David M Reif
Journal:  Toxicol Appl Pharmacol       Date:  2019-07-16       Impact factor: 4.219

Review 2.  Challenges in working towards an internal threshold of toxicological concern (iTTC) for use in the safety assessment of cosmetics: Discussions from the Cosmetics Europe iTTC Working Group workshop.

Authors:  Corie A Ellison; Karen L Blackburn; Paul L Carmichael; Harvey J Clewell; Mark T D Cronin; Bertrand Desprez; Sylvia E Escher; Steve S Ferguson; Sébastien Grégoire; Nicola J Hewitt; Heli M Hollnagel; Martina Klaric; Atish Patel; Sabrina Salhi; Andreas Schepky; Barbara G Schmitt; John F Wambaugh; Andrew Worth
Journal:  Regul Toxicol Pharmacol       Date:  2019-01-15       Impact factor: 3.271

3.  The Next Generation Blueprint of Computational Toxicology at the U.S. Environmental Protection Agency.

Authors:  Russell S Thomas; Tina Bahadori; Timothy J Buckley; John Cowden; Chad Deisenroth; Kathie L Dionisio; Jeffrey B Frithsen; Christopher M Grulke; Maureen R Gwinn; Joshua A Harrill; Mark Higuchi; Keith A Houck; Michael F Hughes; E Sidney Hunter; Kristin K Isaacs; Richard S Judson; Thomas B Knudsen; Jason C Lambert; Monica Linnenbrink; Todd M Martin; Seth R Newton; Stephanie Padilla; Grace Patlewicz; Katie Paul-Friedman; Katherine A Phillips; Ann M Richard; Reeder Sams; Timothy J Shafer; R Woodrow Setzer; Imran Shah; Jane E Simmons; Steven O Simmons; Amar Singh; Jon R Sobus; Mark Strynar; Adam Swank; Rogelio Tornero-Valez; Elin M Ulrich; Daniel L Villeneuve; John F Wambaugh; Barbara A Wetmore; Antony J Williams
Journal:  Toxicol Sci       Date:  2019-06-01       Impact factor: 4.849

4.  Evaluating In Vitro-In Vivo Extrapolation of Toxicokinetics.

Authors:  John F Wambaugh; Michael F Hughes; Caroline L Ring; Denise K MacMillan; Jermaine Ford; Timothy R Fennell; Sherry R Black; Rodney W Snyder; Nisha S Sipes; Barbara A Wetmore; Joost Westerhout; R Woodrow Setzer; Robert G Pearce; Jane Ellen Simmons; Russell S Thomas
Journal:  Toxicol Sci       Date:  2018-05-01       Impact factor: 4.849

5.  Assessing Toxicokinetic Uncertainty and Variability in Risk Prioritization.

Authors:  John F Wambaugh; Barbara A Wetmore; Caroline L Ring; Chantel I Nicolas; Robert G Pearce; Gregory S Honda; Roger Dinallo; Derek Angus; Jon Gilbert; Teresa Sierra; Akshay Badrinarayanan; Bradley Snodgrass; Adam Brockman; Chris Strock; R Woodrow Setzer; Russell S Thomas
Journal:  Toxicol Sci       Date:  2019-12-01       Impact factor: 4.849

6.  Aggregate Exposure Pathways in Support of Risk Assessment.

Authors:  Yu-Mei Tan; Jeremy A Leonard; Stephen Edwards; Justin Teeguarden; Alicia Paini; Peter Egeghy
Journal:  Curr Opin Toxicol       Date:  2018-03-29

7.  In Vitro Bioavailability of the Hydrocarbon Fractions of Dimethyl Sulfoxide Extracts of Petroleum Substances.

Authors:  Yu-Syuan Luo; Kyle C Ferguson; Ivan Rusyn; Weihsueh A Chiu
Journal:  Toxicol Sci       Date:  2020-04-01       Impact factor: 4.849

8.  Considerations for Strategic Use of High-Throughput Transcriptomics Chemical Screening Data in Regulatory Decisions.

Authors:  Joshua Harrill; Imran Shah; R Woodrow Setzer; Derik Haggard; Scott Auerbach; Richard Judson; Russell S Thomas
Journal:  Curr Opin Toxicol       Date:  2019

9.  A systems biology approach to predictive developmental neurotoxicity of a larvicide used in the prevention of Zika virus transmission.

Authors:  Karine Audouze; Olivier Taboureau; Philippe Grandjean
Journal:  Toxicol Appl Pharmacol       Date:  2018-02-21       Impact factor: 4.219

10.  The Power of Resolution: Contextualized Understanding of Biological Responses to Liver Injury Chemicals Using High-throughput Transcriptomics and Benchmark Concentration Modeling.

Authors:  Sreenivasa C Ramaiahgari; Scott S Auerbach; Trey O Saddler; Julie R Rice; Paul E Dunlap; Nisha S Sipes; Michael J DeVito; Ruchir R Shah; Pierre R Bushel; Bruce A Merrick; Richard S Paules; Stephen S Ferguson
Journal:  Toxicol Sci       Date:  2019-06-01       Impact factor: 4.849

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