Literature DB >> 28805813

Analysis of genome-wide association data highlights candidates for drug repositioning in psychiatry.

Hon-Cheong So1,2, Carlos Kwan-Long Chau1, Wan-To Chiu3, Kin-Sang Ho3, Cho-Pong Lo3, Stephanie Ho-Yue Yim4, Pak-Chung Sham5,6,7,8.   

Abstract

Knowledge of psychiatric disease genetics has advanced rapidly during the past decade with the advent of genome-wide association studies (GWAS). However, less progress has been made in harnessing these data to reveal new therapies. Here we propose a framework for drug repositioning by comparing transcriptomes imputed from GWAS data with drug-induced gene expression profiles from the Connectivity Map database and apply this approach to seven psychiatric disorders. We found a number of repositioning candidates, many supported by preclinical or clinical evidence. Repositioning candidates for a number of disorders were also significantly enriched for known psychiatric medications or therapies considered in clinical trials. For example, candidates for schizophrenia were enriched for antipsychotics, while those for bipolar disorder were enriched for both antipsychotics and antidepressants. These findings provide support for the usefulness of GWAS data in guiding drug discovery.

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Year:  2017        PMID: 28805813     DOI: 10.1038/nn.4618

Source DB:  PubMed          Journal:  Nat Neurosci        ISSN: 1097-6256            Impact factor:   24.884


  65 in total

1.  Polygenic overlap between schizophrenia risk and antipsychotic response: a genomic medicine approach.

Authors:  Douglas M Ruderfer; Alexander W Charney; Ben Readhead; Brian A Kidd; Anna K Kähler; Paul J Kenny; Michael J Keiser; Jennifer L Moran; Christina M Hultman; Stuart A Scott; Patrick F Sullivan; Shaun M Purcell; Joel T Dudley; Pamela Sklar
Journal:  Lancet Psychiatry       Date:  2016-02-23       Impact factor: 27.083

Review 2.  The statistical properties of gene-set analysis.

Authors:  Christiaan A de Leeuw; Benjamin M Neale; Tom Heskes; Danielle Posthuma
Journal:  Nat Rev Genet       Date:  2016-04-12       Impact factor: 53.242

3.  Integrative approaches for large-scale transcriptome-wide association studies.

Authors:  Alexander Gusev; Arthur Ko; Huwenbo Shi; Gaurav Bhatia; Wonil Chung; Brenda W J H Penninx; Rick Jansen; Eco J C de Geus; Dorret I Boomsma; Fred A Wright; Patrick F Sullivan; Elina Nikkola; Marcus Alvarez; Mete Civelek; Aldons J Lusis; Terho Lehtimäki; Emma Raitoharju; Mika Kähönen; Ilkka Seppälä; Olli T Raitakari; Johanna Kuusisto; Markku Laakso; Alkes L Price; Päivi Pajukanta; Bogdan Pasaniuc
Journal:  Nat Genet       Date:  2016-02-08       Impact factor: 38.330

4.  Negative symptoms of schizophrenia are improved by the addition of paroxetine to neuroleptics: a double-blind placebo-controlled study.

Authors:  M C Jockers-Scherübl; A Bauer; F Godemann; F M Reischies; F Selig; P Schlattmann
Journal:  Int Clin Psychopharmacol       Date:  2005-01       Impact factor: 1.659

5.  Are NSAIDs useful to treat Alzheimer's disease or mild cognitive impairment?

Authors:  Bruno P Imbimbo; Vincenzo Solfrizzi; Francesco Panza
Journal:  Front Aging Neurosci       Date:  2010-05-21       Impact factor: 5.750

6.  The International Society for Bipolar Disorders (ISBD) task force report on antidepressant use in bipolar disorders.

Authors:  Isabella Pacchiarotti; David J Bond; Ross J Baldessarini; Willem A Nolen; Heinz Grunze; Rasmus W Licht; Robert M Post; Michael Berk; Guy M Goodwin; Gary S Sachs; Leonardo Tondo; Robert L Findling; Eric A Youngstrom; Mauricio Tohen; Juan Undurraga; Ana González-Pinto; Joseph F Goldberg; Ayşegül Yildiz; Lori L Altshuler; Joseph R Calabrese; Philip B Mitchell; Michael E Thase; Athanasios Koukopoulos; Francesc Colom; Mark A Frye; Gin S Malhi; Konstantinos N Fountoulakis; Gustavo Vázquez; Roy H Perlis; Terence A Ketter; Frederick Cassidy; Hagop Akiskal; Jean-Michel Azorin; Marc Valentí; Diego Hidalgo Mazzei; Beny Lafer; Tadafumi Kato; Lorenzo Mazzarini; Anabel Martínez-Aran; Gordon Parker; Daniel Souery; Ayşegül Ozerdem; Susan L McElroy; Paolo Girardi; Michael Bauer; Lakshmi N Yatham; Carlos A Zarate; Andrew A Nierenberg; Boris Birmaher; Shigenobu Kanba; Rif S El-Mallakh; Alessandro Serretti; Zoltan Rihmer; Allan H Young; Georgios D Kotzalidis; Glenda M MacQueen; Charles L Bowden; S Nassir Ghaemi; Carlos Lopez-Jaramillo; Janusz Rybakowski; Kyooseob Ha; Giulio Perugi; Siegfried Kasper; Jay D Amsterdam; Robert M Hirschfeld; Flávio Kapczinski; Eduard Vieta
Journal:  Am J Psychiatry       Date:  2013-11       Impact factor: 18.112

7.  Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.

Authors: 
Journal:  Nat Genet       Date:  2011-09-18       Impact factor: 38.330

8.  Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals.

Authors:  Alexis Battle; Sara Mostafavi; Xiaowei Zhu; James B Potash; Myrna M Weissman; Courtney McCormick; Christian D Haudenschild; Kenneth B Beckman; Jianxin Shi; Rui Mei; Alexander E Urban; Stephen B Montgomery; Douglas F Levinson; Daphne Koller
Journal:  Genome Res       Date:  2013-10-03       Impact factor: 9.043

9.  Multi-target pharmacology: possibilities and limitations of the "skeleton key approach" from a medicinal chemist perspective.

Authors:  Alan Talevi
Journal:  Front Pharmacol       Date:  2015-09-22       Impact factor: 5.810

10.  GWAS and drug targets.

Authors:  Chen Cao; John Moult
Journal:  BMC Genomics       Date:  2014-05-20       Impact factor: 3.969

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  49 in total

Review 1.  From gene networks to drugs: systems pharmacology approaches for AUD.

Authors:  Laura B Ferguson; R Adron Harris; Roy Dayne Mayfield
Journal:  Psychopharmacology (Berl)       Date:  2018-03-01       Impact factor: 4.530

Review 2.  Translational genomics and beyond in bipolar disorder.

Authors:  Chen Zhang; Xiao Xiao; Tao Li; Ming Li
Journal:  Mol Psychiatry       Date:  2020-05-18       Impact factor: 15.992

3.  Transcriptome-wide association analysis offers novel opportunities for clinical translation of genetic discoveries on mental disorders.

Authors:  Eske M Derks; Eric R Gamazon
Journal:  World Psychiatry       Date:  2020-02       Impact factor: 49.548

Review 4.  Post-GWAS in Psychiatric Genetics: A Developmental Perspective on the "Other" Next Steps.

Authors:  Danielle M Dick; Peter B Barr; Seung Bin Cho; Megan E Cooke; Sally I-Chun Kuo; Tenesha J Lewis; Zoe Neale; Jessica E Salvatore; Jeanne Savage; Jinni Su
Journal:  Genes Brain Behav       Date:  2018-02-05       Impact factor: 3.449

Review 5.  The genetics of human personality.

Authors:  S Sanchez-Roige; J C Gray; J MacKillop; C-H Chen; A A Palmer
Journal:  Genes Brain Behav       Date:  2017-12-29       Impact factor: 3.449

6.  Integrating Clinical Data and Imputed Transcriptome from GWAS to Uncover Complex Disease Subtypes: Applications in Psychiatry and Cardiology.

Authors:  Liangying Yin; Carlos K L Chau; Pak-Chung Sham; Hon-Cheong So
Journal:  Am J Hum Genet       Date:  2019-11-27       Impact factor: 11.025

7.  Drug Repurposing Prediction for Immune-Mediated Cutaneous Diseases using a Word-Embedding-Based Machine Learning Approach.

Authors:  Matthew T Patrick; Kalpana Raja; Keylonnie Miller; Jason Sotzen; Johann E Gudjonsson; James T Elder; Lam C Tsoi
Journal:  J Invest Dermatol       Date:  2018-10-17       Impact factor: 8.551

Review 8.  Harnessing endophenotypes and network medicine for Alzheimer's drug repurposing.

Authors:  Jiansong Fang; Andrew A Pieper; Ruth Nussinov; Garam Lee; Lynn Bekris; James B Leverenz; Jeffrey Cummings; Feixiong Cheng
Journal:  Med Res Rev       Date:  2020-07-13       Impact factor: 12.944

9.  Genome-Wide Expression Profiles Drive Discovery of Novel Compounds that Reduce Binge Drinking in Mice.

Authors:  Laura B Ferguson; Angela R Ozburn; Igor Ponomarev; Pamela Metten; Matthew Reilly; John C Crabbe; R Adron Harris; R Dayne Mayfield
Journal:  Neuropsychopharmacology       Date:  2017-12-18       Impact factor: 7.853

Review 10.  Bioinformatic and biological avenues for understanding alcohol use disorder.

Authors:  Emily K Grantham; Sean P Farris
Journal:  Alcohol       Date:  2018-08-23       Impact factor: 2.405

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