The internal molecular structure of lipid-based formulations (LBFs) is poorly understood. In this work we aimed at establishing coarse-grained molecular dynamics simulations as a tool for rapid screening and investigation of the internal environment of these formulations. In order to study complex LBFs composed of different kinds of lipids we simulated a number of systems containing either medium-chain or long-chain lipids with varying proportions of tri-, di-, and monoglycerides. Structural and dynamic measurements and analyses identified that the internal environment in a mixture of lipids was locally ordered even in the absence of water, which might explain some of the previously reported effects on drug solubility in these systems. Further, phase changes occurring upon water dispersion are well captured with coarse-grained simulations. Based on these simulations we conclude that the coarse-grained methodology is a promising in silico approach for rapid screening of structures formed in complex formulations. More importantly it facilitates molecular understanding of interactions between excipients and water at a feasible time scale and, hence, opens up for future virtual drug formulation studies.
The internal molecular structure of lipid-based formulations (LBFs) is poorly understood. In this work we aimed at establishing coarse-grained molecular dynamics simulations as a tool for rapid screening and investigation of the internal environment of these formulations. In order to study complex LBFs composed of different kinds of lipids we simulated a number of systems containing either medium-chain or long-chain lipids with varying proportions of tri-, di-, and monoglycerides. Structural and dynamic measurements and analyses identified that the internal environment in a mixture of lipids was locally ordered even in the absence of water, which might explain some of the previously reported effects on drug solubility in these systems. Further, phase changes occurring upon water dispersion are well captured with coarse-grained simulations. Based on these simulations we conclude that the coarse-grained methodology is a promising in silico approach for rapid screening of structures formed in complex formulations. More importantly it facilitates molecular understanding of interactions between excipients and water at a feasible time scale and, hence, opens up for future virtual drug formulation studies.
Oral administration
of drugs requires the active pharmaceutical
ingredient (API) to be sufficiently soluble in gastric or intestinal
fluid to allow complete absorption. For many compounds formulation
strategies are required to increase the intestinal concentration and
enable absorption. One such strategy is the use of lipid-based formulations
(LBFs), which contain lipids, surfactants, and/or cosolvents. The
solubility of the drug in the formulation is affected by each of the
components. In 2006, Pouton established the lipid formulation classification
system (LFCS) in which LBFs are classified according to their lipid
content and performance upon dispersion and digestion.[1,2] This system has since been used to improve understanding of the
behavior of formulated drugs. In particular, the system has been used
to study LBF performance in intestinal fluids, in response to enzymatic
digestion of, for example, LBF di- and triglycerides.LBF design
and performance has typically been assessed experimentally;
however, the increased use of computational tools could improve our
understanding of, e.g., drug loading of the formulation and performance
after oral administration at a molecular level. One such tool involves
molecular dynamics (MD) simulations. One benefit with MD simulations
is that they can be performed to study LBFs before they are dispersed
in water. It is difficult to characterize the internal structure of
the dry LBF (i.e., all the formulation components prior to dispersion
in water) using traditional experimental techniques.[3] Most classical scattering methods are not sensitive enough,
although more sophisticated methods such as small-angle X-ray or neutron
scattering could be useful.[4,5] MD simulation offers
an alternative to these approaches and allows for a detailed understanding
of many phenomena that are difficult or even impossible to probe experimentally.
Specifically, for lipid–water interactions, a few examples
include H-bond network forming at the membrane interface[6] and the influence of lipid bilayers on dynamics
of water at the lipid bilayer surface.[7] To date, MD simulations have also been used to study phase behavior
and to follow the fate of various drugs during dispersion of the LBF
in water,[8] or digestion.[9,10] However,
the latter studies are relatively few, mainly because MD simulations
performed with a classical all-atom (AA) force field are computationally
costly. As an alternative to AA simulations, it is possible to coarse-grain
a molecular system on a number of levels.[11] The popular Martini force field,[12,13] for example,
uses a mapping strategy involving the grouping of about four atoms
into a single bead. This serves two primary purposes: it drastically
reduces the number of particles in a particular system (for example,
one Martini water bead corresponds to four individual water molecules),
and it also speeds up the overall dynamics in the system, leading
to faster transitions between substates in a simulation ensemble.
It is possible to change the resolution scales, e.g., from the coarse-grained
(CG) scale to the atomistic level, allowing the study of particularly
interesting aspects at an atomic level. The Martini model has been
used successfully in the past to study a number of lipid phase phenomena,
such as formation of gel phases[14,15] and inverted hexagonal[16] and cubic phases.[17] While all CG methods to some extent suffer from reduced spatial
and chemical resolution, many examples such as the ones discussed
here show the general applicability of the Martini force field. For
a more in-depth discussion of the strengths and weaknesses of the
Martini model, we refer the reader to the comprehensive review by
Marrink and Tieleman.[18]A long-term
goal for us is to better understand solubilization
of drugs formulated as LBFs. We therefore decided to explore whether
CG-based MD simulations could help us with this matter. For instance,
it has been shown that the solubility of a drug in an LBF can be approximated
by combining the solubility values of the drug in the individual constituents
of the formulation, weighted by the mass ratio of each compound in
the formulation.[2,19−21] To date, the
molecular reasoning behind this has been unclear, but we are speculating
that it is a result of nanostructuring of the dry LBF. If the excipients
exist as “local clusters” in these nanostructures, each
of the nanostructures would perform as the single excipient (with
the drug solubilized either completely within these structures or
at the interface with the surrounding environment), and, hence, the
solubility of the drug in that local environment would be the same
as in the excipient alone. Thus, in this paper, we focused on establishing
CG MD simulations using the Martini force field as a tool for rapid
screening of local nanostructuring of LFCS class 1 model LBFs consisting
of different kinds of glycerides; we examined the dry form of the
LBFs prior to dispersion in water to mimic the formulation in a capsule
as well as LBFs dispersed in water to mimic the structures likely
to form after intake of a lipid-filled capsule with a glass of water.
Methods
System
Preparation and Setup
We used the Martini CG
force field to study LBFs with different compositions of medium- and
long-chain tri-, di-, and monoglycerides. The CG molecular structures
are shown in Figure S1, where the differences
between the AA and CG representations are clarified. As with earlier
work with AA-based formulations,[8] we performed
a series of simulations at different water/lipid ratios from 0% (w/w),
representing the dry formulation in the capsule, to 5, 10, 20, 50,
and 75% water, representing the dispersed sample. Further, we mimic
digestion by varying the lipid composition from only triglycerides
over systems of mono-, di-, and triglycerides to systems only including
monoglycerides. Table contains an overview of all the explored systems.
Table 1
Summary of the Simulations Performed
To Investigate the Structure of LBFsa
system
no. of triglycerides
no. of diglycerides
no. of monoglycerides
A
1200
B
600
600
60
C
400
400
400
D
600
600
E
1200
F
1200
G
600
600
H
400
400
400
I
600
600
J
1200
Systems A–E are representative
of medium-chain lipid-based formulations containing lipids with about
12 carbon atoms (three coarse-grained C1 beads in each tail), and
systems F–J represent long-chain formulations (16–18
carbons; four C1 beads for each tail).
Systems A–E are representative
of medium-chain lipid-based formulations containing lipids with about
12 carbon atoms (three coarse-grained C1 beads in each tail), and
systems F–J represent long-chain formulations (16–18
carbons; four C1 beads for each tail).The initial parameters used for the different lipids
were taken
from those published earlier by Vuorela et al.[22] and adapted to reflect different lengths of carbon chain
and numbers of lipid tails. This model uses one C1 bead together with
three Na beads for the glycerol headgroup, and C1 beads for the alkyl
chains. All initial systems and topologies are available as Supporting Information.The simulation
systems were built using Packmol[23] and
were then run using GROMACS v5.[24,25] The simulation trajectories
were visualized using VMD.[26] All simulations
used the Martini[12,27] force field v2.2, with polarizable
water,[13] using a time step of 20 fs. The
energy was first minimized in all
systems using steepest descents for 1000 steps followed by an initial
equilibration in two stages, first using a 10 fs time step for 300000
steps, and then using a 20 fs time step. Production runs were then
carried out for 2 μs for each system separately, again using
a 20 fs time step. Pressure and temperature were controlled with the
Parinello–Rahman (isotropic) barostat[28] and the velocity rescale thermostat,[29] respectively, and were maintained at 1 bar and 310 K. The relative
electrostatic screening was set to 2.5 in accordance with recommendations
for polarizable Martini water, with the polarizable water providing
explicit screening. Calculations of electrostatics used the reaction-field
model, with a cutoff of 1.1 nm, and van der Waals interactions were
treated with a plain 1.1 nm cutoff (combined with the potential-shift-Verlet
modifier in Gromacs 5).
Data Analysis
The self-mean-square
diffusion was calculated
using standard Gromacs tools (gmx msd), with the overall center of
mass motion removed, and diffusion constants were calculated from
the fit to the linear region of these curves.The cosine similarity
is a measure of similarity between two vectors, ranging from −1
to 1. Two vectors with the same orientation have a cosine similarity
of 1, two vectors at 90 deg have a similarity of 0, and two opposite
vectors have a similarity of −1. We employed this method for
the vectors that resulted from monitoring the movement of the head-groups
of individual lipids over a period of time (taking vectors from the
initial lipid position to the final position). We then calculated
the cosine similarity between a central lipid (i.e., the green colored
vector in Figure ) and its immediate neighbors
(all black vectors, one-by-one, in Figure ).
Figure 3
Diffusion of a central lipid (red), and that
of its immediate neighbors
(blue, within 1 nm cutoff). The plots show (left; no water) a situation
where the motion of nearby lipids does not show any particular overall
direction, and (right; 75% water) a situation where the orientation
of each diffusion vector, on average, is correlated.
Snapshots of the A–J system configurations
with 0% water,
after 2 μs. System A is in the top left corner, and system J
is in the lower right. Lipid tails are colored cyan, triglyceride
head-groups red, diglyceride head-groups orange, and monoglyceride
head-groups yellow. For convenience, a scale bar representing 1 nm
has been inserted into each snapshot. In these systems, the glycerol
head-groups interact with each other, giving rise to nanostructuring
resembling inverse micelles. In addition, the head-groups also seem
to form long, narrow, worm-like regions.Snapshots of the A–-J system configurations with 75% w/w
water concentration, after 2 μs. The color scheme is as in Figure , with lipid tails
in cyan, triglyceride head-groups in red, diglyceride headgroups in
orange, and monoglyceride headgroups in yellow. For convenience, a
scale bar representing 1 nm has been inserted into each snapshot.
Water particles have been rendered as a transparent surface. Several
lamellar phases were formed, and the lipids were partitioned according
to kind, with triglycerides (red) moving farthest away from the water,
followed by diglycerides, and finally monoglycerides, which were the
most common lipids present at the water–lipid boundary.
Figure 2
Snapshots of the A–-J system configurations with 75% w/w
water concentration, after 2 μs. The color scheme is as in Figure , with lipid tails
in cyan, triglyceride head-groups in red, diglyceride headgroups in
orange, and monoglyceride headgroups in yellow. For convenience, a
scale bar representing 1 nm has been inserted into each snapshot.
Water particles have been rendered as a transparent surface. Several
lamellar phases were formed, and the lipids were partitioned according
to kind, with triglycerides (red) moving farthest away from the water,
followed by diglycerides, and finally monoglycerides, which were the
most common lipids present at the water–lipid boundary.
Diffusion of a central lipid (red), and that
of its immediate neighbors
(blue, within 1 nm cutoff). The plots show (left; no water) a situation
where the motion of nearby lipids does not show any particular overall
direction, and (right; 75% water) a situation where the orientation
of each diffusion vector, on average, is correlated.The excess number of “like neighbors”
was calculated
for a particular lipid as the ratio of the actual number of the same
lipid type (tri-, di-, or monoglyceride in this case) within a certain
distance and the expected number of lipids of the same type around
the central lipid. This latter number was obtained by counting all
the lipids in the region and then multiplying by the mole fraction
for each lipid type.[30] An excess number
larger than 1 indicates that a lipid is more likely to have a like
neighbor than an unlike neighbor, suggesting that there is an effective
“attraction” between lipids of the same kind or, equivalently,
a “repulsion” between lipids of different species.The second rank order parameter (P2) was calculated fromwhere θ is the angle between
a bond
and some normal direction, typically taken to be the bilayer normal
(parallel to the z-axis) for bilayer systems, with
the angle bracket indicating an ensemble average. P2 = 1 means perfect
alignment with the normal, P2 = −0.5 means antialignment, and
P2 = 0 means random orientation. Lamellar structures are not always
formed with the normal along the z-axis, and, hence,
calculations of the P2 order parameter were performed using different
normal directions for each case. For simulations with 75% (w/w) water,
this direction was identified on a case-by-case basis from the alignments
of the lamellar phases in Figure , and the same direction was then chosen as the direction
for the dry systems as well. The reorientational autocorrelation function C(t) of the P2 order parameter was calculated
to further characterize the fluidity of the system in terms of the
local dynamic properties. The plateau of C(t) after an extended period corresponds to a residual value
and reflects the long-term order of the system.
Results
Phase Behavior
All of the simulated systems spontaneously
assembled into different phases, changing with the number of water
beads in the system; inverted micellar structures were formed at low
water concentrations, and phase-separated, lamellar systems were formed
at higher water concentrations, as has previously been observed with
AA MD simulations.[8−11]Figures and 2 show the final snapshots (after 2 μs) of
all the systems, at 0% and 75% water concentration. For the studied
LBFs, phase separation into water- and lipid-rich phases occurred
in simulations with water concentrations of 20% to 50%. The analyses
we have performed below, as well as visual inspection of the trajectories,
do not point to any significant difference between the short (A–E)
or long (F–J) lipid chain LBFs with respect to the formation
of phases. This is not completely unexpected, and could potentially
change with a greater difference in chain length (the lipids simulated
herein differed by only one C1 bead in chain length).
Figure 1
Snapshots of the A–J system configurations
with 0% water,
after 2 μs. System A is in the top left corner, and system J
is in the lower right. Lipid tails are colored cyan, triglyceride
head-groups red, diglyceride head-groups orange, and monoglyceride
head-groups yellow. For convenience, a scale bar representing 1 nm
has been inserted into each snapshot. In these systems, the glycerol
head-groups interact with each other, giving rise to nanostructuring
resembling inverse micelles. In addition, the head-groups also seem
to form long, narrow, worm-like regions.
Diffusion
As the water content in all the systems was
increased from no water to a few, relatively constrained water beads,
to almost 45000 Martini water beads (corresponding to 180000 AA water
molecules), the self-diffusion of water increased 4-fold, from around
0.5 × 10–5 cm2/s to approximately
2.0 × 10–5 cm2/s (Figure S2). This value, for systems with most of the water
molecules in the bulk phase, is consistent with both the experimentally
reported values for self-diffusion of water (2.3 × 10–5 cm2/s[12,13,31]) and the polarized Martini water model (2.18 × 10–5 cm2/s[13]). As previously reported
for AA simulations,[8] the situation was
markedly different for the lipids. The self-diffusion of the lipids
was reduced when the amount of water was increased. Again, this is
representative of a phase change; for water concentrations greater
than 20%, the lipids form more lamellar phases and therefore are more
constrained with regard to motion, and the diffusion coefficient is
therefore decreased.To illustrate in more detail, we monitored
the motion of randomly selected lipids and their closest lipid neighbors
(within a cutoff distance of 1.0 nm) over a specific time interval. Figure depicts this motion
for 0% and 75% water in system A (only medium-chain triglycerides).
At the low water concentration (Figure a), there are three lipids that are moving in the same
direction as the central (green vector) lipid, and five others that
move either orthogonally or in the opposite direction. As the amount
of water was increased, however, the movement patterns of the central
lipid became increasingly correlated with those of its neighbors (Figure b). We used the cosine
similarity to quantify this effect further (Figure ). For systems with 0% water (and up to 20%
water, data not shown), using the cosine similarity, there were no
specific correlations between the movements of neighboring lipids.
Again, the situation changed when the systems underwent a phase change
into a lamellar phase. Figure shows that the frequency of correlated diffusion at 75% water
was higher, with more cosine similarities closer to 1, as a consequence
of the formation of a lamellar phase, which restricted the movement
of individual lipids.
Figure 4
Binned cosine similarities for three systems (systems
A, B, and
C, see Table ) at
0% and 75% water concentrations, calculated for the central lipid
and its neighbors and averaged over the final 10 frames in each case.
Red bars correspond to 0% water, with no overall preference for lipids
to move in a correlated fashion, and yellow overlaid bars correspond
to the same analysis but for 75% water. There was a clear trend at
75% water for more values closer to 1, which indicates diffusion vectors
with the same direction. In particular here, for system B, there was
also a decrease in negative values, which further supports the coordinated
movement of lipids in systems containing 75% water.
Binned cosine similarities for three systems (systems
A, B, and
C, see Table ) at
0% and 75% water concentrations, calculated for the central lipid
and its neighbors and averaged over the final 10 frames in each case.
Red bars correspond to 0% water, with no overall preference for lipids
to move in a correlated fashion, and yellow overlaid bars correspond
to the same analysis but for 75% water. There was a clear trend at
75% water for more values closer to 1, which indicates diffusion vectors
with the same direction. In particular here, for system B, there was
also a decrease in negative values, which further supports the coordinated
movement of lipids in systems containing 75% water.
Lipid Packing
Figure shows the radial distribution functions
for the lipids
in systems C and H (i.e., tri-, di-, and monoglycerides, of medium
and long chain lengths, respectively) at 0% and 75% water content.
For both systems, at 0% water, there was a sharp peak at about 0.5
nm, followed by a second peak which was most pronounced for the monoglycerides
at 0.7–0.8 nm. There are, however, small, subtle differences
between these plots, with the monoglycerides in the long-chain lipid
mixtures in particular appearing to associate slightly more closely
than either the di- or triglycerides. This may be a result of the
ability of the monoglycerides, which have only one lipid tail, to
pack more closely together. As the amount of water was increased,
these patterns shifted, however, and the relative peak heights of
the different lipid types changed. The triglycerides packed most closely
in this scenario, presumably as an effect of hydrophobicity, and the
energetically more favored system configurations were therefore those
that reduced exposure to water. This was also evident from the phases
shown in Figure and Figure ). Interestingly,
for both the medium- and long-chain systems (C and H, respectively)
at 75% water, the diglyceride peaks were lowest.
Figure 5
Lipid–lipid radial
distribution functions for two systems
(system C, panels A and C; and system H, panels B and D) containing
all three types of lipids (tri-, di-, and monoglycerides) at 0% (panels
A and B) and 75% (panels C and D) water. Distance in nm on x-axis, rdf values on y-axis.
Lipid–lipid radial
distribution functions for two systems
(system C, panels A and C; and system H, panels B and D) containing
all three types of lipids (tri-, di-, and monoglycerides) at 0% (panels
A and B) and 75% (panels C and D) water. Distance in nm on x-axis, rdf values on y-axis.Analysis of the distances between the water beads
and the lipid
head-groups (GLY bead, Figure S3) also
provides information on the packing behavior, and the changes that
occurred as the amount of water was increased. It was evident that,
although the amount of water at low concentrations was not enough
to cause complete phase separation, at water concentrations as low
as 5% there was a change in how the lipids interacted with water,
shown as a distinct peak appearing at approximately 0.5 nm (same as
the first maximum in the rdf figures).
Neighboring Like/Unlike
Atoms
In a mixture of different
kinds of lipids, if the mixture is random, there should be no preference
or relative increase in any particular lipid type over any other lipid
type. When comparing the two systems that contained tri-, di-, and
monoglycerides (systems C and H, with medium- and long-chain lipids,
respectively), the monoglycerides were enriched near other monoglycerides
(an excess number of 1.04 and 1.07 for C and H), and the triglycerides
were similarly depleted near each other (0.95 and 0.93). At longer
distances (beyond roughly 3 nm), the dry systems behaved like random
mixtures with respect to the different kinds of lipids, whereas formation
of lamellar phases meant that the entire box length had to be taken
into account before the ratio of like/unlike atoms returns to 1 (Figure ).
Figure 6
Ratio of the actual number
of like neighbors to the expected number
of like neighbors for systems C (medium-chain tri-, di-, and monoglycerides)
and H (long-chain tri-, di-, and monoglycerides), at 0% (left) and
75% (right) water content. In the dry long-chain system (left panel),
there is a relatively higher abundance of monoglycerides near other
monoglycerides (1.04 for system C and 1.07 for system H), and there
is also a corresponding decrease in the excess number of triglycerides
(0.93 and 0.95). The long-term order induced by formation of a lamellar
phase at higher water content (right) is also evident.
Ratio of the actual number
of like neighbors to the expected number
of like neighbors for systems C (medium-chain tri-, di-, and monoglycerides)
and H (long-chain tri-, di-, and monoglycerides), at 0% (left) and
75% (right) water content. In the dry long-chain system (left panel),
there is a relatively higher abundance of monoglycerides near other
monoglycerides (1.04 for system C and 1.07 for system H), and there
is also a corresponding decrease in the excess number of triglycerides
(0.93 and 0.95). The long-term order induced by formation of a lamellar
phase at higher water content (right) is also evident.
Order Parameters and Reorientational Dynamics
For the
majority of the systems, even though the resulting phase with 75%
water was not always perfectly lamellar (see, for example, Figure , system J), a higher
water content induced more ordered lipid tails (Figure ). For some systems (e.g., E) this change
was quite significant, and a phase that was almost a double bilayer
was formed. General lamellar structures with sometimes very pronounced
curvatures were formed for other systems (e.g., systems B and J).
Figure 7
Second
rank (P2) order parameters (x-axis) shown
as histograms (y-axis) for all systems A–J
(each system in the corresponding figure panel) at 0% (red) and 75%
(yellow) water concentration.
Second
rank (P2) order parameters (x-axis) shown
as histograms (y-axis) for all systems A–J
(each system in the corresponding figure panel) at 0% (red) and 75%
(yellow) water concentration.Calculation of the autocorrelation times (C(t)) for the P2 order parameter and, in particular,
the plateau
of C(t) provided information about
the long-term, residual order of the systems. Figures S4 and S5 show two major features: (i) the reorientational
dynamics of the lipid tails were very rapid in all systems with less
than 50% water concentration (only at the higher water concentrations
was there any significant long-term order), and (ii) there was no
discernible difference in the dynamics between the medium- and long-chain
lipid formulations.
Discussion
Lipid molecules are able
to self-assemble into a variety of phases
with different structures and geometries. The (multifaceted) behavior
of lipids in ordered or disordered, crystalline, gel, or liquid-crystalline
phases has been studied extensively previously.[32−36] We have focused on the phases formed in various mixtures
of tri-, di-, and monoglycerides typically employed in LBFs for poorly
soluble drugs, as specified in Table , and the dependence of these phases on chain length.
We wanted to investigate the degree to which CG MD simulations can
be used to study these phenomena. Atomistic systems can be coarse
grained on a number of levels, with different consequences. For example,
the lack of entropy arising from removing the atomic degrees of freedom
(especially from the solvent) can be compensated for with an effective
enthalpic term. Temperature-dependent properties should therefore
be interpreted with care. CG simulations require much less computational
resources than AA simulations and provide faster time-to-solution
(the time that is required before converged ensemble properties can
be extracted from the simulations). Therefore, if a CG simulation
can produce the same phase behavior and partitioning of lipids and
water beads as seen with an AA simulation, it will be a very useful
computational screening tool for understanding the internal milieu
of an LBF, and any subsequent changes to the LBF will obviously affect
drug loading and the performance of the LBF in turn.The phase
behavior we have modeled here is consistent with results
that have been reported earlier in the literature for AA systems.
For example, oleic acid has formed both micellar and lamellar phases
at high water concentrations, and oleic acid monoglycerides were locally
enriched in a cubic phase when hydrated with 50 to 80% water.[37] Other combinations of lipids and lipid mixtures
have also been studied, both experimentally and with computational
tools.[38−40] Consistent with the results here, monoolein experimentally
forms a lamellar phase at less than 10% water, followed by a cubic
phase up to 40% water,[40] and our observation
that monoglycerides are enriched in certain phases was also observed
previously for oleic acid mixtures.[37] It
should be noted in this context that formation of any type of structure
in simulations such as these is to some extent dependent on the combination
of the size of the box and the number of lipids in the box. The simulation
box might be too small for the space required for formation of certain
lipid–water phases. Nevertheless, we believe that the simulations
represent local environments accurately, i.e., a lipid-rich lamellar
phase and bulk water. For example, the presence of high-curvature
regions, particularly in the water-rich systems, is in agreement with
either of the Pn3m or Ia3d cubic phases, and these lipid phases will obviously
affect drug solubility and partitioning. The small-scale effects can
to some extent be alleviated with a much larger simulation box, and,
for example, the recently developed implicit solvent version of the
Martini force field[41] (dry Martini) would
be interesting to try in this context. As many as six different self-assembled
structures of hexagonal, lamellar, and cubic types in the transition
from the water-in-oil (w/o) reversed micellar or microemulsion system
to an oil-in-water (o/w) micellar or microemulsion system have been
reported.[42] Even though the CG mono- and
diglycerides used here probably are less surface active than in nature,
the fact that we upon dilution see aggregates with triglycerides at
the core and mono- and (to a lesser extent) diglycerides forming the
surface layer is reassuring, as this has also been observed experimentally.[43]One of the key characteristics
of a system
that undergoes a phase change is the change in the self-diffusion
of the molecular species that constitute the system. Our results for
self-diffusion of water and lipids are in qualitative agreement with
those reported earlier.[8] The CG representation
introduced by the Martini force field often leads to faster dynamics
and a smoother conformational energy landscape,[12] which increases the rate of many processes such as diffusion.
While it is difficult to exactly quantify this increase in rate,[12,27] it could explain in part some of the differences in lipid self-diffusion
values between our results and those reported earlier. For example,
our average diffusion rate for the long-chain systems (F–J)
was 0.12 × 10–5 cm2/s at low water
concentrations, reduced to 0.05 × 10–5 cm2/s at a water concentration of 75%. In comparison, previous
values reported from experiments for a monooleate system are 0.018
× 10–5 cm2/s (approximately 20%
water), 0.024 × 10–5 cm2/s (40%
water),[12,44] and 0.02 × 10–5 cm2/s (81% water).[45]The longevity
of any nanoaggregates formed could also affect drug behavior. Therefore,
looking at diffusion as a collective property for a set of neighboring
lipids is illuminating. Drugs exhibit very different solubility and
partitioning profiles when the local environment around them changes.
To this end, we have tried to quantify the degree to which aggregates
move in concert, similarly to what has been done for all-atom simulations
before,[30,46] that is, whether lipids that are near to
each other stay with the same surrounding lipids over time. This was
done as a means of exploring the stability of the various kinds of
aggregates that are formed in lipid mixtures, in order to provide
insight into any rearrangements that might be occurring, particularly
in the dry systems. We found evidence for diffusion behavior changing
as the amount of water in the system changes. For a completely dry
system, over the time scales we analyzed (200 ns), any local microstructure
existed only transiently, as judged by calculating the distribution
of cosine similarities, whereas higher water concentrations led to
formation of local environments that did not change as much (Figures and 4).
Neighboring Like/Unlike Atoms
Experimental
determination
of the local distribution of lipids is challenging, even for better-defined
systems such as bilayers. In a random mixture, the mean composition
of all neighboring lipids in a sufficiently large circle drawn around
a lipid of either type will be the same and will reflect the bulk
composition. It should be noted that this may not be true at short
distances, because molecular sizes or shapes may lead to different
distributions of neighbor distances for different types of neighbors,
even if the overall distribution is random. We noted subtle differences
between medium- and long-chain lipid systems (Figure ). In the dry systems, the monoglycerides
had a positive excess of like neighbors (up to 1.07 for the monoglycerides
in system H and 1.04 for system C when measured as described elsewhere),
whereas the triglycerides had negative excess at short distances (0.93
and 0.95, up to a distance of 3 nm). This correlated quantitatively
with the radial distribution functions for systems C and H (Figure , A and B) without
water, where the monoglycerides appeared to form a well-defined second
solvation shell out to a distance of about 1.5 nm. Although the long
distance analysis of these systems points at a random mixture of excipients,
the short distance (few nanometers) points at local small clusters
of the components that are not mixed to any larger extent with the
other excipients. This may explain, at least in part, the additive
solubility effect of the excipients included in an LBF that has been
observed experimentally.[20] The simulations
indicate that each of the included excipients forms local nanostructures
in the dry LBF and that the interaction between the excipients is
minimal. Hence, based on the results from the simulations, we speculate
that, when drug molecules dissolve in the LBF, they simply saturate
each of the included components. The total loading capacity of the
formulation therefore equals the sum of the concentrations possible
to dissolve in each excipient volume fraction.
Orientational Dynamics
By calculating the second rank
order parameter along the entire lipid tail (as opposed to calculating
for each bond separately), we have shown that all systems underwent
a change from a state in which the lipid tails had no preferred direction
(order parameters around 0, Figure ) to a relatively more ordered configuration (histogram
peaks moving toward positive P2 values) when the water content was
increased. The lack of overall order in the dry systems does not mean
that there was no local structuring, which, as stated above, indeed
does exist. We emphasize here that calculations of order parameters
have typically been carried out for (preformed) lipid bilayers, where
their interpretation is more straightforward. Here, matters were more
complicated, since not all systems form bilayered phases with a well-defined
normal direction. Also the presence of high-curvature regions (for
example, system J) means that the use of a fixed director axis for
the order parameter calculation likely “hides” some
of the ordering that is observed visually.Calculations of P2
autocorrelations (Figures S4 and S5) showed
that the lipids are able to maintain their relative orientation with
respect to some director only at high water concentrations, which
is consistent with the correlated diffusion behavior found for nearby
lipids in water concentrations above 50%. This further supports our
observation that the local nanostructuring that does occur in dry
systems is of a transient nature.
Conclusions
Coarse
grained molecular dynamics simulation is a step toward virtual
screening of nanostructures and phase transition of lipid-based drug
delivery systems. For the systems studied herein we observed nanostructures
of lipids, that are dynamic in composition and over time, in the dry
formulation. These structures provide an explanation to previous experimental
data on drug loading capacity of LBFs. As the amount of water is increased,
the simulation systems undergo a phase transition into separate lipid
and water phases. At a water content mimicking a dispersed lipid-filled
capsule after intake with a glass of water, these lipid phases are
ordered on several levels. In contrast to AA simulations, coarse-graining
has the advantage that it drastically reduces computation times and
enables studies of drug disposition, partitioning, and solubility
at relevant physiological conditions since larger box sizes can be
explored. Hence, we view CG molecular dynamics as a way forward to
computationally screen molecular interactions between water, drug
molecules, and components of complex formulations such as LBFs.
Authors: Sander Pronk; Szilárd Páll; Roland Schulz; Per Larsson; Pär Bjelkmar; Rossen Apostolov; Michael R Shirts; Jeremy C Smith; Peter M Kasson; David van der Spoel; Berk Hess; Erik Lindahl Journal: Bioinformatics Date: 2013-02-13 Impact factor: 6.937
Authors: Luca Monticelli; Senthil K Kandasamy; Xavier Periole; Ronald G Larson; D Peter Tieleman; Siewert-Jan Marrink Journal: J Chem Theory Comput Date: 2008-05 Impact factor: 6.006
Authors: Clément Arnarez; Jaakko J Uusitalo; Marcelo F Masman; Helgi I Ingólfsson; Djurre H de Jong; Manuel N Melo; Xavier Periole; Alex H de Vries; Siewert J Marrink Journal: J Chem Theory Comput Date: 2014-12-17 Impact factor: 6.006
Authors: Dallas B Warren; Shadabul Haque; Mitchell P McInerney; Karen M Corbett; Endri Kastrati; Leigh Ford; Hywel D Williams; Vincent Jannin; Hassan Benameur; Christopher J H Porter; David K Chalmers; Colin W Pouton Journal: Pharm Res Date: 2021-09-24 Impact factor: 4.200