Literature DB >> 28784967

Microcrystallography of Protein Crystals and In Cellulo Diffraction.

Marion Boudes1, Damià Garriga1, Fasséli Coulibaly2.   

Abstract

The advent of high-quality microfocus beamlines at many synchrotron facilities has permitted the routine analysis of crystals smaller than 10 µm in their largest dimension, which used to represent a challenge. We present two alternative workflows for the structure determination of protein microcrystals by X-ray crystallography with a particular focus on crystals grown in vivo. The microcrystals are either extracted from cells by sonication and purified by differential centrifugation, or analyzed in cellulo after cell sorting by flow cytometry of crystal-containing cells. Optionally, purified crystals or crystal-containing cells are soaked in heavy atom solutions for experimental phasing. These samples are then prepared for diffraction experiments in a similar way by application onto a micromesh support and flash cooling in liquid nitrogen. We briefly describe and compare serial diffraction experiments of isolated microcrystals and crystal-containing cells using a microfocus synchrotron beamline to produce datasets suitable for phasing, model building and refinement. These workflows are exemplified with crystals of the Bombyx mori cypovirus 1 (BmCPV1) polyhedrin produced by infection of insect cells with a recombinant baculovirus. In this case study, in cellulo analysis is more efficient than analysis of purified crystals and yields a structure in ~8 days from expression to refinement.

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Year:  2017        PMID: 28784967      PMCID: PMC5612586          DOI: 10.3791/55793

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  38 in total

1.  Virology: holed up in a natural crystal.

Authors:  Felix A Rey
Journal:  Nature       Date:  2007-03-01       Impact factor: 49.962

2.  The atomic structure of baculovirus polyhedra reveals the independent emergence of infectious crystals in DNA and RNA viruses.

Authors:  Fasséli Coulibaly; Elaine Chiu; Sascha Gutmann; Chitra Rajendran; Peter W Haebel; Keiko Ikeda; Hajime Mori; Vernon K Ward; Clemens Schulze-Briese; Peter Metcalf
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-10       Impact factor: 11.205

Review 3.  Micro-crystallography comes of age.

Authors:  Janet L Smith; Robert F Fischetti; Masaki Yamamoto
Journal:  Curr Opin Struct Biol       Date:  2012-09-26       Impact factor: 6.809

4.  iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM.

Authors:  T Geoff G Battye; Luke Kontogiannis; Owen Johnson; Harold R Powell; Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

5.  A method for production of recombinant mCD1d protein in insect cells.

Authors:  Archana Khurana; Mitchell Kronenberg
Journal:  J Vis Exp       Date:  2007-12-10       Impact factor: 1.355

6.  Structure of a photosynthetic reaction centre determined by serial femtosecond crystallography.

Authors:  Linda C Johansson; David Arnlund; Gergely Katona; Thomas A White; Anton Barty; Daniel P DePonte; Robert L Shoeman; Cecilia Wickstrand; Amit Sharma; Garth J Williams; Andrew Aquila; Michael J Bogan; Carl Caleman; Jan Davidsson; R Bruce Doak; Matthias Frank; Raimund Fromme; Lorenzo Galli; Ingo Grotjohann; Mark S Hunter; Stephan Kassemeyer; Richard A Kirian; Christopher Kupitz; Mengning Liang; Lukas Lomb; Erik Malmerberg; Andrew V Martin; Marc Messerschmidt; Karol Nass; Lars Redecke; M Marvin Seibert; Jennie Sjöhamn; Jan Steinbrener; Francesco Stellato; Dingjie Wang; Weixaio Y Wahlgren; Uwe Weierstall; Sebastian Westenhoff; Nadia A Zatsepin; Sébastien Boutet; John C H Spence; Ilme Schlichting; Henry N Chapman; Petra Fromme; Richard Neutze
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

7.  Serial crystallography on in vivo grown microcrystals using synchrotron radiation.

Authors:  Cornelius Gati; Gleb Bourenkov; Marco Klinge; Dirk Rehders; Francesco Stellato; Dominik Oberthür; Oleksandr Yefanov; Benjamin P Sommer; Stefan Mogk; Michael Duszenko; Christian Betzel; Thomas R Schneider; Henry N Chapman; Lars Redecke
Journal:  IUCrJ       Date:  2014-02-10       Impact factor: 4.769

8.  Real-time investigation of dynamic protein crystallization in living cells.

Authors:  R Schönherr; M Klinge; J M Rudolph; K Fita; D Rehders; F Lübber; S Schneegans; I V Majoul; M Duszenko; C Betzel; A Brandariz-Nuñez; J Martinez-Costas; R Duden; L Redecke
Journal:  Struct Dyn       Date:  2015-05-22       Impact factor: 2.920

9.  An in cellulo-derived structure of PAK4 in complex with its inhibitor Inka1.

Authors:  Yohendran Baskaran; Khay C Ang; Praju V Anekal; Wee L Chan; Jonathan M Grimes; Ed Manser; Robert C Robinson
Journal:  Nat Commun       Date:  2015-11-26       Impact factor: 14.919

10.  MeshAndCollect: an automated multi-crystal data-collection workflow for synchrotron macromolecular crystallography beamlines.

Authors:  Ulrich Zander; Gleb Bourenkov; Alexander N Popov; Daniele de Sanctis; Olof Svensson; Andrew A McCarthy; Ekaterina Round; Valentin Gordeliy; Christoph Mueller-Dieckmann; Gordon A Leonard
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-10-31
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  1 in total

1.  Nipah Virus Infection Generates Ordered Structures in Cellulo.

Authors:  Cecilia Alejandra Vázquez; Lina Widerspick; Roland Thuenauer; Carola Schneider; Rudolph Reimer; Pedro Neira; Catherine Olal; Michelle Heung; Linda Niemetz; Philip Lawrence; Indre Kucinskaite-Kodze; Lars Redecke; Beatriz Escudero-Pérez
Journal:  Viruses       Date:  2022-07-12       Impact factor: 5.818

  1 in total

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