Literature DB >> 28783164

Effect of sequence variants on variance in glucose levels predicts type 2 diabetes risk and accounts for heritability.

Erna V Ivarsdottir1,2, Valgerdur Steinthorsdottir1, Maryam S Daneshpour3, Gudmar Thorleifsson1, Patrick Sulem1, Hilma Holm1, Snaevar Sigurdsson1, Astradur B Hreidarsson4, Gunnar Sigurdsson4, Ragnar Bjarnason5,6, Arni V Thorsson5, Rafn Benediktsson4,6, Gudmundur Eyjolfsson7, Olof Sigurdardottir8, Isleifur Olafsson9, Sirous Zeinali10, Fereidoun Azizi11, Unnur Thorsteinsdottir1,6, Daniel F Gudbjartsson1,2, Kari Stefansson1,6.   

Abstract

Sequence variants that affect mean fasting glucose levels do not necessarily affect risk for type 2 diabetes (T2D). We assessed the effects of 36 reported glucose-associated sequence variants on between- and within-subject variance in fasting glucose levels in 69,142 Icelanders. The variant in TCF7L2 that increases fasting glucose levels increases between-subject variance (5.7% per allele, P = 4.2 × 10-10), whereas variants in GCK and G6PC2 that increase fasting glucose levels decrease between-subject variance (7.5% per allele, P = 4.9 × 10-11 and 7.3% per allele, P = 7.5 × 10-18, respectively). Variants that increase mean and between-subject variance in fasting glucose levels tend to increase T2D risk, whereas those that increase the mean but reduce variance do not (r2 = 0.61). The variants that increase between-subject variance increase fasting glucose heritability estimates. Intuitively, our results show that increasing the mean and variance of glucose levels is more likely to cause pathologically high glucose levels than increase in the mean offset by a decrease in variance.

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Year:  2017        PMID: 28783164     DOI: 10.1038/ng.3928

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  24 in total

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Journal:  Biometrics       Date:  1999-12       Impact factor: 2.571

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Authors:  Struan F A Grant; Gudmar Thorleifsson; Inga Reynisdottir; Rafn Benediktsson; Andrei Manolescu; Jesus Sainz; Agnar Helgason; Hreinn Stefansson; Valur Emilsson; Anna Helgadottir; Unnur Styrkarsdottir; Kristinn P Magnusson; G Bragi Walters; Ebba Palsdottir; Thorbjorg Jonsdottir; Thorunn Gudmundsdottir; Arnaldur Gylfason; Jona Saemundsdottir; Robert L Wilensky; Muredach P Reilly; Daniel J Rader; Yu Bagger; Claus Christiansen; Vilmundur Gudnason; Gunnar Sigurdsson; Unnur Thorsteinsdottir; Jeffrey R Gulcher; Augustine Kong; Kari Stefansson
Journal:  Nat Genet       Date:  2006-01-15       Impact factor: 38.330

3.  Large-scale whole-genome sequencing of the Icelandic population.

Authors:  Daniel F Gudbjartsson; Hannes Helgason; Sigurjon A Gudjonsson; Florian Zink; Asmundur Oddson; Arnaldur Gylfason; Soren Besenbacher; Gisli Magnusson; Bjarni V Halldorsson; Eirikur Hjartarson; Gunnar Th Sigurdsson; Simon N Stacey; Michael L Frigge; Hilma Holm; Jona Saemundsdottir; Hafdis Th Helgadottir; Hrefna Johannsdottir; Gunnlaugur Sigfusson; Gudmundur Thorgeirsson; Jon Th Sverrisson; Solveig Gretarsdottir; G Bragi Walters; Thorunn Rafnar; Bjarni Thjodleifsson; Einar S Bjornsson; Sigurdur Olafsson; Hildur Thorarinsdottir; Thora Steingrimsdottir; Thora S Gudmundsdottir; Asgeir Theodors; Jon G Jonasson; Asgeir Sigurdsson; Gyda Bjornsdottir; Jon J Jonsson; Olafur Thorarensen; Petur Ludvigsson; Hakon Gudbjartsson; Gudmundur I Eyjolfsson; Olof Sigurdardottir; Isleifur Olafsson; David O Arnar; Olafur Th Magnusson; Augustine Kong; Gisli Masson; Unnur Thorsteinsdottir; Agnar Helgason; Patrick Sulem; Kari Stefansson
Journal:  Nat Genet       Date:  2015-03-25       Impact factor: 38.330

4.  Sex modifies genetic effects on residual variance in urinary calcium excretion in rat (Rattus norvegicus).

Authors:  Guy M L Perry; Keith W Nehrke; David A Bushinsky; Robert Reid; Krista L Lewandowski; Paul Hueber; Steven J Scheinman
Journal:  Genetics       Date:  2012-05-02       Impact factor: 4.562

5.  Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.

Authors:  Benjamin F Voight; Laura J Scott; Valgerdur Steinthorsdottir; Andrew P Morris; Christian Dina; Ryan P Welch; Eleftheria Zeggini; Cornelia Huth; Yurii S Aulchenko; Gudmar Thorleifsson; Laura J McCulloch; Teresa Ferreira; Harald Grallert; Najaf Amin; Guanming Wu; Cristen J Willer; Soumya Raychaudhuri; Steve A McCarroll; Claudia Langenberg; Oliver M Hofmann; Josée Dupuis; Lu Qi; Ayellet V Segrè; Mandy van Hoek; Pau Navarro; Kristin Ardlie; Beverley Balkau; Rafn Benediktsson; Amanda J Bennett; Roza Blagieva; Eric Boerwinkle; Lori L Bonnycastle; Kristina Bengtsson Boström; Bert Bravenboer; Suzannah Bumpstead; Noisël P Burtt; Guillaume Charpentier; Peter S Chines; Marilyn Cornelis; David J Couper; Gabe Crawford; Alex S F Doney; Katherine S Elliott; Amanda L Elliott; Michael R Erdos; Caroline S Fox; Christopher S Franklin; Martha Ganser; Christian Gieger; Niels Grarup; Todd Green; Simon Griffin; Christopher J Groves; Candace Guiducci; Samy Hadjadj; Neelam Hassanali; Christian Herder; Bo Isomaa; Anne U Jackson; Paul R V Johnson; Torben Jørgensen; Wen H L Kao; Norman Klopp; Augustine Kong; Peter Kraft; Johanna Kuusisto; Torsten Lauritzen; Man Li; Aloysius Lieverse; Cecilia M Lindgren; Valeriya Lyssenko; Michel Marre; Thomas Meitinger; Kristian Midthjell; Mario A Morken; Narisu Narisu; Peter Nilsson; Katharine R Owen; Felicity Payne; John R B Perry; Ann-Kristin Petersen; Carl Platou; Christine Proença; Inga Prokopenko; Wolfgang Rathmann; N William Rayner; Neil R Robertson; Ghislain Rocheleau; Michael Roden; Michael J Sampson; Richa Saxena; Beverley M Shields; Peter Shrader; Gunnar Sigurdsson; Thomas Sparsø; Klaus Strassburger; Heather M Stringham; Qi Sun; Amy J Swift; Barbara Thorand; Jean Tichet; Tiinamaija Tuomi; Rob M van Dam; Timon W van Haeften; Thijs van Herpt; Jana V van Vliet-Ostaptchouk; G Bragi Walters; Michael N Weedon; Cisca Wijmenga; Jacqueline Witteman; Richard N Bergman; Stephane Cauchi; Francis S Collins; Anna L Gloyn; Ulf Gyllensten; Torben Hansen; Winston A Hide; Graham A Hitman; Albert Hofman; David J Hunter; Kristian Hveem; Markku Laakso; Karen L Mohlke; Andrew D Morris; Colin N A Palmer; Peter P Pramstaller; Igor Rudan; Eric Sijbrands; Lincoln D Stein; Jaakko Tuomilehto; Andre Uitterlinden; Mark Walker; Nicholas J Wareham; Richard M Watanabe; Gonçalo R Abecasis; Bernhard O Boehm; Harry Campbell; Mark J Daly; Andrew T Hattersley; Frank B Hu; James B Meigs; James S Pankow; Oluf Pedersen; H-Erich Wichmann; Inês Barroso; Jose C Florez; Timothy M Frayling; Leif Groop; Rob Sladek; Unnur Thorsteinsdottir; James F Wilson; Thomas Illig; Philippe Froguel; Cornelia M van Duijn; Kari Stefansson; David Altshuler; Michael Boehnke; Mark I McCarthy
Journal:  Nat Genet       Date:  2010-07       Impact factor: 38.330

6.  Major histocompatibility complex harbors widespread genotypic variability of non-additive risk of rheumatoid arthritis including epistasis.

Authors:  Wen-Hua Wei; John Bowes; Darren Plant; Sebastien Viatte; Annie Yarwood; Jonathan Massey; Jane Worthington; Stephen Eyre
Journal:  Sci Rep       Date:  2016-04-25       Impact factor: 4.379

Review 7.  Drosophila bristles and the nature of quantitative genetic variation.

Authors:  Trudy F Mackay; Richard F Lyman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-07-29       Impact factor: 6.237

8.  Inheritance beyond plain heritability: variance-controlling genes in Arabidopsis thaliana.

Authors:  Xia Shen; Mats Pettersson; Lars Rönnegård; Örjan Carlborg
Journal:  PLoS Genet       Date:  2012-08-02       Impact factor: 5.917

9.  Common variants at 10 genomic loci influence hemoglobin A₁(C) levels via glycemic and nonglycemic pathways.

Authors:  Nicole Soranzo; Serena Sanna; Eleanor Wheeler; Christian Gieger; Dörte Radke; Josée Dupuis; Nabila Bouatia-Naji; Claudia Langenberg; Inga Prokopenko; Elliot Stolerman; Manjinder S Sandhu; Matthew M Heeney; Joseph M Devaney; Muredach P Reilly; Sally L Ricketts; Alexandre F R Stewart; Benjamin F Voight; Christina Willenborg; Benjamin Wright; David Altshuler; Dan Arking; Beverley Balkau; Daniel Barnes; Eric Boerwinkle; Bernhard Böhm; Amélie Bonnefond; Lori L Bonnycastle; Dorret I Boomsma; Stefan R Bornstein; Yvonne Böttcher; Suzannah Bumpstead; Mary Susan Burnett-Miller; Harry Campbell; Antonio Cao; John Chambers; Robert Clark; Francis S Collins; Josef Coresh; Eco J C de Geus; Mariano Dei; Panos Deloukas; Angela Döring; Josephine M Egan; Roberto Elosua; Luigi Ferrucci; Nita Forouhi; Caroline S Fox; Christopher Franklin; Maria Grazia Franzosi; Sophie Gallina; Anuj Goel; Jürgen Graessler; Harald Grallert; Andreas Greinacher; David Hadley; Alistair Hall; Anders Hamsten; Caroline Hayward; Simon Heath; Christian Herder; Georg Homuth; Jouke-Jan Hottenga; Rachel Hunter-Merrill; Thomas Illig; Anne U Jackson; Antti Jula; Marcus Kleber; Christopher W Knouff; Augustine Kong; Jaspal Kooner; Anna Köttgen; Peter Kovacs; Knut Krohn; Brigitte Kühnel; Johanna Kuusisto; Markku Laakso; Mark Lathrop; Cécile Lecoeur; Man Li; Mingyao Li; Ruth J F Loos; Jian'an Luan; Valeriya Lyssenko; Reedik Mägi; Patrik K E Magnusson; Anders Mälarstig; Massimo Mangino; María Teresa Martínez-Larrad; Winfried März; Wendy L McArdle; Ruth McPherson; Christa Meisinger; Thomas Meitinger; Olle Melander; Karen L Mohlke; Vincent E Mooser; Mario A Morken; Narisu Narisu; David M Nathan; Matthias Nauck; Chris O'Donnell; Konrad Oexle; Nazario Olla; James S Pankow; Felicity Payne; John F Peden; Nancy L Pedersen; Leena Peltonen; Markus Perola; Ozren Polasek; Eleonora Porcu; Daniel J Rader; Wolfgang Rathmann; Samuli Ripatti; Ghislain Rocheleau; Michael Roden; Igor Rudan; Veikko Salomaa; Richa Saxena; David Schlessinger; Heribert Schunkert; Peter Schwarz; Udo Seedorf; Elizabeth Selvin; Manuel Serrano-Ríos; Peter Shrader; Angela Silveira; David Siscovick; Kjioung Song; Timothy D Spector; Kari Stefansson; Valgerdur Steinthorsdottir; David P Strachan; Rona Strawbridge; Michael Stumvoll; Ida Surakka; Amy J Swift; Toshiko Tanaka; Alexander Teumer; Gudmar Thorleifsson; Unnur Thorsteinsdottir; Anke Tönjes; Gianluca Usala; Veronique Vitart; Henry Völzke; Henri Wallaschofski; Dawn M Waterworth; Hugh Watkins; H-Erich Wichmann; Sarah H Wild; Gonneke Willemsen; Gordon H Williams; James F Wilson; Juliane Winkelmann; Alan F Wright; Carina Zabena; Jing Hua Zhao; Stephen E Epstein; Jeanette Erdmann; Hakon H Hakonarson; Sekar Kathiresan; Kay-Tee Khaw; Robert Roberts; Nilesh J Samani; Mark D Fleming; Robert Sladek; Gonçalo Abecasis; Michael Boehnke; Philippe Froguel; Leif Groop; Mark I McCarthy; W H Linda Kao; Jose C Florez; Manuela Uda; Nicholas J Wareham; Inês Barroso; James B Meigs
Journal:  Diabetes       Date:  2010-09-21       Impact factor: 9.461

10.  The genetic susceptibility to type 2 diabetes may be modulated by obesity status: implications for association studies.

Authors:  Stéphane Cauchi; Kevin T Nead; Hélène Choquet; Fritz Horber; Natascha Potoczna; Beverley Balkau; Michel Marre; Guillaume Charpentier; Philippe Froguel; David Meyre
Journal:  BMC Med Genet       Date:  2008-05-22       Impact factor: 2.103

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  9 in total

Review 1.  Next-Generation Sequencing Strategies.

Authors:  Shawn E Levy; Braden E Boone
Journal:  Cold Spring Harb Perspect Med       Date:  2019-07-01       Impact factor: 6.915

2.  Genotypic variability-based genome-wide association study identifies non-additive loci HLA-C and IL12B for psoriasis.

Authors:  Wen-Hua Wei; Jonathan Massey; Jane Worthington; Anne Barton; Richard B Warren
Journal:  J Hum Genet       Date:  2017-12-19       Impact factor: 3.172

Review 3.  Dietary Fat and the Genetic Risk of Type 2 Diabetes.

Authors:  Germán D Carrasquilla; Hermina Jakupović; Tuomas O Kilpeläinen
Journal:  Curr Diab Rep       Date:  2019-11-04       Impact factor: 4.810

4.  A quantile integral linear model to quantify genetic effects on phenotypic variability.

Authors:  Jiacheng Miao; Yupei Lin; Yuchang Wu; Boyan Zheng; Lauren L Schmitz; Jason M Fletcher; Qiongshi Lu
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-19       Impact factor: 12.779

5.  GWAS of longitudinal trajectories at biobank scale.

Authors:  Seyoon Ko; Christopher A German; Aubrey Jensen; Judong Shen; Anran Wang; Devan V Mehrotra; Yan V Sun; Janet S Sinsheimer; Hua Zhou; Jin J Zhou
Journal:  Am J Hum Genet       Date:  2022-02-22       Impact factor: 11.043

6.  WiSER: Robust and scalable estimation and inference of within-subject variances from intensive longitudinal data.

Authors:  Christopher A German; Janet S Sinsheimer; Jin Zhou; Hua Zhou
Journal:  Biometrics       Date:  2021-06-18       Impact factor: 2.571

7.  Genome-wide Association Study of Change in Fasting Glucose over time in 13,807 non-diabetic European Ancestry Individuals.

Authors:  Ching-Ti Liu; Jordi Merino; Denis Rybin; Daniel DiCorpo; Kelly S Benke; Jennifer L Bragg-Gresham; Mickaël Canouil; Tanguy Corre; Harald Grallert; Aaron Isaacs; Zoltan Kutalik; Jari Lahti; Letizia Marullo; Carola Marzi; Laura J Rasmussen-Torvik; Ghislain Rocheleau; Rico Rueedi; Chiara Scapoli; Niek Verweij; Nicole Vogelzangs; Sara M Willems; Loïc Yengo; Stephan J L Bakker; John Beilby; Jennie Hui; Eero Kajantie; Martina Müller-Nurasyid; Wolfgang Rathmann; Beverley Balkau; Sven Bergmann; Johan G Eriksson; Jose C Florez; Philippe Froguel; Tamara Harris; Joseph Hung; Alan L James; Maryam Kavousi; Iva Miljkovic; Arthur W Musk; Lyle J Palmer; Annette Peters; Ronan Roussel; Pim van der Harst; Cornelia M van Duijn; Peter Vollenweider; Inês Barroso; Inga Prokopenko; Josée Dupuis; James B Meigs; Nabila Bouatia-Naji
Journal:  Sci Rep       Date:  2019-07-01       Impact factor: 4.379

8.  Heritability and genome-wide association analyses of fasting plasma glucose in Chinese adult twins.

Authors:  Weijing Wang; Caixia Zhang; Hui Liu; Chunsheng Xu; Haiping Duan; Xiaocao Tian; Dongfeng Zhang
Journal:  BMC Genomics       Date:  2020-07-18       Impact factor: 3.969

9.  QTL Mapping on a Background of Variance Heterogeneity.

Authors:  Robert W Corty; William Valdar
Journal:  G3 (Bethesda)       Date:  2018-12-10       Impact factor: 3.154

  9 in total

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