Literature DB >> 28779078

Aspergillus Secondary Metabolite Database, a resource to understand the Secondary metabolome of Aspergillus genus.

Varahalarao Vadlapudi1, Nabajyoti Borah1, Kanaka Raju Yellusani1, Sriramya Gade1, Prabhakar Reddy1, Maheshwari Rajamanikyam1, Lakshmi Narasimha Santosh Vempati1, Satya Prakash Gubbala1, Pankaj Chopra1,2, Suryanarayana Murty Upadhyayula3, Ramars Amanchy4.   

Abstract

Aspergillus is a genus of ubiquitous fungi that are pathologically & therapeutically important. Aspergillus Secondary Metabolites Database (A2MDB) is a curated compendium of information on Aspergillus & its secondary metabolome. A2MDB catalogs 807 unique non-redundantsecondary metabolites derived from 675 Aspergillus species. A2MDB has a compilation of 100 cellular targets of secondary metabolites, 44 secondary metabolic pathways, 150 electron and light microscopy images of various Aspergillus species. A phylogenetic representation of over 2500 strains has been provided. A2MDB presents a detailed chemical information of secondary metabolites and their mycotoxins. Molecular docking models of metabolite-target protein interactions have been put together. A2MDB also has epidemiological data representing Aspergillosis and global occurrence of Aspergillus species. Furthermore a novel classification of Aspergillosis along with 370 case reports with images, were made available. For each metabolite catalogued, external links to related databases have been provided. All this data is available on A2MDB, launched through Indian Institute of Chemical Technology, Hyderabad, India, as an open resource http://www.iictindia.org/A2MDB . We believe A2MDB is of practical relevance to the scientific community that is in pursuit of novel therapeutics.

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Year:  2017        PMID: 28779078      PMCID: PMC5544713          DOI: 10.1038/s41598-017-07436-w

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  51 in total

1.  TOXNET: an evolving web resource for toxicology and environmental health information.

Authors:  P Wexler
Journal:  Toxicology       Date:  2001-01-12       Impact factor: 4.221

Review 2.  Pathogenesis of Aspergillus fumigatus in Invasive Aspergillosis.

Authors:  Taylor R T Dagenais; Nancy P Keller
Journal:  Clin Microbiol Rev       Date:  2009-07       Impact factor: 26.132

3.  antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.

Authors:  Marnix H Medema; Kai Blin; Peter Cimermancic; Victor de Jager; Piotr Zakrzewski; Michael A Fischbach; Tilmann Weber; Eriko Takano; Rainer Breitling
Journal:  Nucleic Acids Res       Date:  2011-06-14       Impact factor: 16.971

4.  EHFPI: a database and analysis resource of essential host factors for pathogenic infection.

Authors:  Yang Liu; Dafei Xie; Lu Han; Hui Bai; Fei Li; Shengqi Wang; Xiaochen Bo
Journal:  Nucleic Acids Res       Date:  2014-11-20       Impact factor: 16.971

5.  Aspergillus clavatus Y2H0002 as a New Endophytic Fungal Strain Producing Gibberellins Isolated from Nymphoides pe ltata in Fresh Water.

Authors:  Young-Hyun You; Tae Won Kwak; Sang-Mo Kang; Myung-Chul Lee; Jong-Guk Kim
Journal:  Mycobiology       Date:  2015-03-31       Impact factor: 1.858

Review 6.  Ecology of aspergillosis: insights into the pathogenic potency of Aspergillus fumigatus and some other Aspergillus species.

Authors:  Caroline Paulussen; John E Hallsworth; Sergio Álvarez-Pérez; William C Nierman; Philip G Hamill; David Blain; Hans Rediers; Bart Lievens
Journal:  Microb Biotechnol       Date:  2016-06-07       Impact factor: 5.813

7.  NetwoRx: connecting drugs to networks and phenotypes in Saccharomyces cerevisiae.

Authors:  Kristen Fortney; Wing Xie; Max Kotlyar; Joshua Griesman; Yulia Kotseruba; Igor Jurisica
Journal:  Nucleic Acids Res       Date:  2012-11-29       Impact factor: 16.971

8.  MetaMicrobesOnline: phylogenomic analysis of microbial communities.

Authors:  Dylan Chivian; Paramvir S Dehal; Keith Keller; Adam P Arkin
Journal:  Nucleic Acids Res       Date:  2012-11-30       Impact factor: 16.971

9.  The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations.

Authors:  Gustavo C Cerqueira; Martha B Arnaud; Diane O Inglis; Marek S Skrzypek; Gail Binkley; Matt Simison; Stuart R Miyasato; Jonathan Binkley; Joshua Orvis; Prachi Shah; Farrell Wymore; Gavin Sherlock; Jennifer R Wortman
Journal:  Nucleic Acids Res       Date:  2013-11-04       Impact factor: 16.971

10.  The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.

Authors:  Ron Caspi; Richard Billington; Luciana Ferrer; Hartmut Foerster; Carol A Fulcher; Ingrid M Keseler; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Lukas A Mueller; Quang Ong; Suzanne Paley; Pallavi Subhraveti; Daniel S Weaver; Peter D Karp
Journal:  Nucleic Acids Res       Date:  2015-11-02       Impact factor: 16.971

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  17 in total

1.  An epigenetic modifier induces production of 3-(4-oxopyrano)-chromen-2-ones in Aspergillus sp. AST0006, an endophytic fungus of Astragalus lentiginosus.

Authors:  Marcelo R de Amorim; E M Kithsiri Wijeratne; Shengliang Zhou; A Elizabeth Arnold; Andrea N L Batista; João M Batista; Lourdes C Dos Santos; A A Leslie Gunatilaka
Journal:  Tetrahedron       Date:  2020-08-22       Impact factor: 2.457

2.  Tryptoquivalines W and X, two new compounds from a Hawaiian fungal strain and their biological activities.

Authors:  Kh Ahammad Uz Zaman; Zhenquan Hu; Xiaohua Wu; Shugeng Cao
Journal:  Tetrahedron Lett       Date:  2020-02-11       Impact factor: 2.415

Review 3.  Enzymatic degradation of xyloglucans by Aspergillus species: a comparative view of this genus.

Authors:  Tomohiko Matsuzawa; Akira Watanabe; Takahiro Shintani; Katsuya Gomi; Katsuro Yaoi
Journal:  Appl Microbiol Biotechnol       Date:  2021-03-24       Impact factor: 4.813

4.  NF-κB inhibitory, antimicrobial and antiproliferative potentials of compounds from Hawaiian fungus Aspergillus polyporicola FS910.

Authors:  Cong Wang; K H Ahammad Uz Zaman; Ariel M Sarotti; Xiaohua Wu; Shao-Liang Zheng; Shugeng Cao
Journal:  3 Biotech       Date:  2021-07-30       Impact factor: 2.893

5.  Secondary metabolites from the Aspergillus sp. in the rhizosphere soil of Phoenix dactylifera (Palm tree).

Authors:  Raha Orfali; Shagufta Perveen
Journal:  BMC Chem       Date:  2019-08-07

6.  Waikikiamides A-C: Complex Diketopiperazine Dimer and Diketopiperazine-Polyketide Hybrids from a Hawaiian Marine Fungal Strain Aspergillus sp. FM242.

Authors:  Fuqian Wang; Ariel M Sarotti; Guangde Jiang; José C Huguet-Tapia; Shao-Liang Zheng; Xiaohua Wu; Chunshun Li; Yousong Ding; Shugeng Cao
Journal:  Org Lett       Date:  2020-05-20       Impact factor: 6.005

7.  Volatiles from three genome sequenced fungi from the genus Aspergillus.

Authors:  Jeroen S Dickschat; Ersin Celik; Nelson L Brock
Journal:  Beilstein J Org Chem       Date:  2018-04-24       Impact factor: 2.883

8.  Bioactive Compounds from Marine-Derived Aspergillus, Penicillium, Talaromyces and Trichoderma Species.

Authors:  Rosario Nicoletti; Francesco Vinale
Journal:  Mar Drugs       Date:  2018-10-26       Impact factor: 5.118

9.  Tricycloalternarene Analogs from a Symbiotic Fungus Aspergillus sp. D and Their Antimicrobial and Cytotoxic Effects.

Authors:  Huawei Zhang; Ziping Zhao; Jianwei Chen; Xuelian Bai; Hong Wang
Journal:  Molecules       Date:  2018-04-09       Impact factor: 4.411

Review 10.  Taxonomy and evolution of Aspergillus, Penicillium and Talaromyces in the omics era - Past, present and future.

Authors:  Chi-Ching Tsang; James Y M Tang; Susanna K P Lau; Patrick C Y Woo
Journal:  Comput Struct Biotechnol J       Date:  2018-05-31       Impact factor: 7.271

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