| Literature DB >> 28775310 |
Yunlan Jiang1, Ivonne J Garzón-Orduña2, Shaun L Winterton2, Fan Yang1, Xingyue Liu3.
Abstract
Chrysopidae (green lacewings) is the second largest family in Neuroptera, and it includes medium-size lacewings largely recognized by the presence of golden-colored eyes, bright green bodies and delicate wings with dense venation patterns. The subfamily Chrysopinae includes 97% of the species diversity in the family and it is currently divided into four tribes: Ankylopterygini, Belonopterygini, Chrysopini and Leucochrysini. Here we sequenced and annotated the nearly complete mitochondrial genomes of four species of each these tribes: Abachrysa eureka, Italochrysa insignis, Leucochrysa pretiosa, Parankyloteryx sp. We then reconstructed the phylogenetic relationships with estimated divergence times among tribes of Chrysopinae based on the mt genomic data. Our results suggest that Chrysopinae sans Nothancyla verreauxi evolved as two reciprocally monophyletic lineages formed by stem members of the tribes Leucochrysini plus Belonopterygini on one hand, and the stem members of Ankylopterygini plus Chrysopini on the other. Our estimations of divergence times place the diversification of stem Chrysopinae into the extant tribes during the Middle Jurassic to Late Cretaceous. The relatively young ages previously estimated for the green lacewing divergences were probably underestimated due to false inferences of homology between non-sister taxa that are later correctly identified as homoplasy after more taxa are added.Entities:
Mesh:
Year: 2017 PMID: 28775310 PMCID: PMC5543154 DOI: 10.1038/s41598-017-07431-1
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Mitochondrial map of the four species we sequenced. Circular maps were drawn with CGView[45]. The arrows indicated the orientation of gene transcription. The tRNAs are denoted by the color blocks and are labelled according to the IUPACIUB single-letter amino acid codes (L1: UUR; L2: CNU; S1: AGN; S2: UCN). The GC content was plotted using a black sliding window, as the deviation from the average GC content of the entire sequence. GC-skew was plotted as the deviation from the average GC-skew of the entire sequence. The inner cycle indicated the location of the genes in the mt genome.
Figure 2Inferred secondary structure of 19 tRNAs in the mt genome. Most tRNAs are labeled with the abbreviations of their corresponding amino acids. Dash (-) indicates Watson-Crick bonds and dot (•) indicates GU bonds.
Figure 3Predicted secondary structure of the rrnL in the Abachrysa eureka mt genomes. Roman numerals denote the conserved domain structure. Dash (-) indicates Watson-Crick base pairing and dot (•) indicates G-U base pairing.
Figure 4Phylogenetic hypothesis of green-lacewings obtained with Bayesian inference and maximum likelihood based on mitogenomes, divergence time estimates calculated with Phylobayes are also featured. Branch support values are featured at their respective node in the following order: bootstrap values/posterior probabilities (resulted under partition-specific models)/posterior probabilities (resulted under CAT model). Letters on nodes correspond to the age estimates featured in Table 2. Scale units are in millions of years. Stars indicate the node with fossil calibration and letters are used as arbitrary labels.
Sampling list of the present phylogenomic analysis.
| Family | Species | GenBank accession number | Reference |
|---|---|---|---|
| Chrysopidae |
| KY587199 | Present study |
|
| KY587200 | Present study | |
|
| KY587201 | Present study | |
|
| KY587202 | Present study | |
|
| AP011624 | Haruyama | |
|
| JX033119 | He | |
|
| AP011623 | Haruyama | |
|
| KP264629 | Dai | |
|
| KP264630 | Dai | |
| Hemerobiidae |
| KT425075 | Wang |
|
| KR078257 | Zhao | |
|
| KT425087 | Wang | |
| Mantispidae |
| FJ859906 | Cameron |
Mean divergence times and 95% high posterior density (HPD) intervals for each node of the topology presented in Fig. 4.
| Node | Estimations using fossil calibrations | Estimations using fixed COI substitution rate | ||||
|---|---|---|---|---|---|---|
| Mean age | Inferior 95% | Superior 95% | Mean age | Inferior 95% | Superior 95% | |
| a | 260.07 | 258.13 | 262.02 | 7.13 | 4.29 | 10.77 |
| b | 247.24 | 222.15 | 259.66 | 7.02 | 4.24 | 10.64 |
| c | 140.32 | 62.86 | 211.35 | 5.00 | 3.17 | 7.67 |
| d | 109.51 | 41.48 | 189.51 | 4.45 | 2.71 | 6.71 |
| e | 201.33 | 181.00 | 227.06 | 3.34 | 2.18 | 5.47 |
| f | 149.38 | 34.56 | 207.49 | 3.07 | 1.81 | 4.61 |
| g | 192.51 | 175.27 | 217.07 | 3.52 | 2.05 | 5.19 |
| h | 184.65 | 170.49 | 207.39 | 3.32 | 2.04 | 5.01 |
| i | 80.92 | 26.25 | 181.76 | 3.06 | 1.82 | 4.56 |
| j | 62.86 | 14.62 | 174.40 | 2.10 | 1.21 | 3.14 |
| k | 170.91 | 163.20 | 190.88 | 2.74 | 1.68 | 4.12 |
| l | 84.22 | 21.01 | 156.46 | 2.04 | 1.24 | 3.11 |
Time-scale units are in millions of years.