Literature DB >> 28765000

Advances in microscale separations towards nanoproteomics applications.

Lian Yi1, Paul D Piehowski1, Tujin Shi1, Richard D Smith1, Wei-Jun Qian2.   

Abstract

Microscale separation (e.g., liquid chromatography or capillary electrophoresis) coupled with mass spectrometry (MS) has become the primary tool for advanced proteomics, an indispensable technology for gaining understanding of complex biological processes. In recent decades significant advances have been achieved in MS-based proteomics. However, the current proteomics platforms still face an analytical challenge in overall sensitivity towards nanoproteomics applications for starting materials of less than 1μg total proteins (e.g., cellular heterogeneity in tissue pathologies). Herein, we review recent advances in microscale separation techniques and integrated sample processing strategies that improve the overall sensitivity and proteome coverage of the proteomics workflow, and their contributions towards nanoproteomics applications.
Copyright © 2017 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Capillary electrophoresis; Mass spectrometry; Microscale separations; NanoLC; Nanoproteomics

Mesh:

Substances:

Year:  2017        PMID: 28765000      PMCID: PMC6042839          DOI: 10.1016/j.chroma.2017.07.055

Source DB:  PubMed          Journal:  J Chromatogr A        ISSN: 0021-9673            Impact factor:   4.759


  106 in total

1.  Online automated in vivo zebrafish phosphoproteomics: from large-scale analysis down to a single embryo.

Authors:  Simone Lemeer; Martijn W H Pinkse; Shabaz Mohammed; Bas van Breukelen; Jeroen den Hertog; Monique Slijper; Albert J R Heck
Journal:  J Proteome Res       Date:  2008-02-29       Impact factor: 4.466

2.  Mass transport in a micro flow-through vial of a junction-at-the-tip capillary electrophoresis-mass spectrometry interface.

Authors:  Xuefei Zhong; E Jane Maxwell; David D Y Chen
Journal:  Anal Chem       Date:  2011-05-17       Impact factor: 6.986

Review 3.  Multidimensional proteomics for cell biology.

Authors:  Mark Larance; Angus I Lamond
Journal:  Nat Rev Mol Cell Biol       Date:  2015-04-10       Impact factor: 94.444

4.  Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum.

Authors:  Tujin Shi; Thomas L Fillmore; Xuefei Sun; Rui Zhao; Athena A Schepmoes; Mahmud Hossain; Fang Xie; Si Wu; Jong-Seo Kim; Nathan Jones; Ronald J Moore; Ljiljana Pasa-Tolić; Jacob Kagan; Karin D Rodland; Tao Liu; Keqi Tang; David G Camp; Richard D Smith; Wei-Jun Qian
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-04       Impact factor: 11.205

Review 5.  Protein analysis by shotgun/bottom-up proteomics.

Authors:  Yaoyang Zhang; Bryan R Fonslow; Bing Shan; Moon-Chang Baek; John R Yates
Journal:  Chem Rev       Date:  2013-02-26       Impact factor: 60.622

6.  Single-shot proteomics using capillary zone electrophoresis-electrospray ionization-tandem mass spectrometry with production of more than 1250 Escherichia coli peptide identifications in a 50 min separation.

Authors:  Guijie Zhu; Liangliang Sun; Xiaojing Yan; Norman J Dovichi
Journal:  Anal Chem       Date:  2013-02-13       Impact factor: 6.986

7.  The advantage of laser-capture microdissection over whole tissue analysis in proteomic profiling studies.

Authors:  Tommaso De Marchi; Rene B H Braakman; Christoph Stingl; Martijn M van Duijn; Marcel Smid; John A Foekens; Theo M Luider; John W M Martens; Arzu Umar
Journal:  Proteomics       Date:  2016-04-28       Impact factor: 3.984

Review 8.  Proteomics pipeline for biomarker discovery of laser capture microdissected breast cancer tissue.

Authors:  Ning Qing Liu; René B H Braakman; Christoph Stingl; Theo M Luider; John W M Martens; John A Foekens; Arzu Umar
Journal:  J Mammary Gland Biol Neoplasia       Date:  2012-05-30       Impact factor: 2.673

9.  Whole-exome sequencing of circulating tumor cells provides a window into metastatic prostate cancer.

Authors:  Jens G Lohr; Viktor A Adalsteinsson; Kristian Cibulskis; Atish D Choudhury; Mara Rosenberg; Peter Cruz-Gordillo; Joshua M Francis; Cheng-Zhong Zhang; Alex K Shalek; Rahul Satija; John J Trombetta; Diana Lu; Naren Tallapragada; Narmin Tahirova; Sora Kim; Brendan Blumenstiel; Carrie Sougnez; Alarice Lowe; Bang Wong; Daniel Auclair; Eliezer M Van Allen; Mari Nakabayashi; Rosina T Lis; Gwo-Shu M Lee; Tiantian Li; Matthew S Chabot; Amy Ly; Mary-Ellen Taplin; Thomas E Clancy; Massimo Loda; Aviv Regev; Matthew Meyerson; William C Hahn; Philip W Kantoff; Todd R Golub; Gad Getz; Jesse S Boehm; J Christopher Love
Journal:  Nat Biotechnol       Date:  2014-04-20       Impact factor: 54.908

10.  Open tubular lab-on-column/mass spectrometry for targeted proteomics of nanogram sample amounts.

Authors:  Hanne Kolsrud Hustoft; Tore Vehus; Ole Kristian Brandtzaeg; Stefan Krauss; Tyge Greibrokk; Steven Ray Wilson; Elsa Lundanes
Journal:  PLoS One       Date:  2014-09-15       Impact factor: 3.240

View more
  11 in total

1.  Carrier-Assisted Single-Tube Processing Approach for Targeted Proteomics Analysis of Low Numbers of Mammalian Cells.

Authors:  Pengfei Zhang; Matthew J Gaffrey; Ying Zhu; William B Chrisler; Thomas L Fillmore; Lian Yi; Carrie D Nicora; Tong Zhang; Huanming Wu; Jon Jacobs; Keqi Tang; Jacob Kagan; Sudhir Srivastava; Karin D Rodland; Wei-Jun Qian; Richard D Smith; Tao Liu; H Steven Wiley; Tujin Shi
Journal:  Anal Chem       Date:  2018-12-28       Impact factor: 6.986

2.  Coupling suspension trapping-based sample preparation and data-independent acquisition mass spectrometry for sensitive exosomal proteomic analysis.

Authors:  Ci Wu; Shiyun Zhou; Megan I Mitchell; Chunyan Hou; Stephen Byers; Olivier Loudig; Junfeng Ma
Journal:  Anal Bioanal Chem       Date:  2022-02-18       Impact factor: 4.478

3.  Portable capillary liquid chromatography for pharmaceutical and illicit drug analysis.

Authors:  Samuel W Foster; Xiaofeng Xie; Michelle Pham; Paul A Peaden; Leena M Patil; Luke T Tolley; Paul B Farnsworth; H Dennis Tolley; Milton L Lee; James P Grinias
Journal:  J Sep Sci       Date:  2020-02-05       Impact factor: 3.645

Review 4.  Microfluidics for Peptidomics, Proteomics, and Cell Analysis.

Authors:  Rui Vitorino; Sofia Guedes; João Pinto da Costa; Václav Kašička
Journal:  Nanomaterials (Basel)       Date:  2021-04-26       Impact factor: 5.076

Review 5.  MS1 ion current-based quantitative proteomics: A promising solution for reliable analysis of large biological cohorts.

Authors:  Xue Wang; Shichen Shen; Sailee Suryakant Rasam; Jun Qu
Journal:  Mass Spectrom Rev       Date:  2019-03-28       Impact factor: 10.946

6.  Systematic Investigation of LC Miniaturization to Increase Sensitivity in Wide-Target LC-MS-Based Trace Bioanalysis of Small Molecules.

Authors:  Veronika Fitz; Yasin El Abiead; Daniel Berger; Gunda Koellensperger
Journal:  Front Mol Biosci       Date:  2022-07-18

Review 7.  Tooth Enamel and its Dynamic Protein Matrix.

Authors:  Ana Gil-Bona; Felicitas B Bidlack
Journal:  Int J Mol Sci       Date:  2020-06-23       Impact factor: 6.208

8.  Facile carrier-assisted targeted mass spectrometric approach for proteomic analysis of low numbers of mammalian cells.

Authors:  Tujin Shi; Matthew J Gaffrey; Thomas L Fillmore; Carrie D Nicora; Lian Yi; Pengfei Zhang; Anil K Shukla; H Steven Wiley; Karin D Rodland; Tao Liu; Richard D Smith; Wei-Jun Qian
Journal:  Commun Biol       Date:  2018-08-06

9.  Micropuncture of Bowman's Space in Mice Facilitated by 2 Photon Microscopy.

Authors:  Katsuyuki Matsushita; Kirsti Golgotiu; Daniel J Orton; Richard D Smith; Karin D Rodland; Paul D Piehowski; Michael P Hutchens
Journal:  J Vis Exp       Date:  2018-10-11       Impact factor: 1.355

10.  Infrared Laser Ablation Microsampling with a Reflective Objective.

Authors:  Chao Dong; Luke T Richardson; Touradj Solouki; Kermit K Murray
Journal:  J Am Soc Mass Spectrom       Date:  2022-02-01       Impact factor: 3.109

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.