Literature DB >> 28754939

Catalytic diversity in self-propagating peptide assemblies.

Tolulope O Omosun1, Ming-Chien Hsieh2, W Seth Childers1, Dibyendu Das1, Anil K Mehta1, Neil R Anthony3, Ting Pan1, Martha A Grover2, Keith M Berland3, David G Lynn1.   

Abstract

The protein-only infectious agents known as prions exist within cellular matrices as populations of assembled polypeptide phases ranging from particles to amyloid fibres. These phases appear to undergo Darwinian-like selection and propagation, yet remarkably little is known about their accessible chemical and biological functions. Here we construct simple peptides that assemble into well-defined amyloid phases and define paracrystalline surfaces able to catalyse specific enantioselective chemical reactions. Structural adjustments of individual amino acid residues predictably control both the assembled crystalline order and their accessible catalytic repertoire. Notably, the density and proximity of the extended arrays of enantioselective catalytic sites achieve template-directed polymerization of new polymers. These diverse amyloid templates can now be extended as dynamic self-propagating templates for the construction of even more complex functional materials.

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Year:  2017        PMID: 28754939     DOI: 10.1038/nchem.2738

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  34 in total

1.  An efficient benchtop system for multigram-scale kinetic resolutions using aldolase antibodies.

Authors:  J M Turner; T Bui; R A Lerner; C F Barbas; B List
Journal:  Chemistry       Date:  2000-08-04       Impact factor: 5.236

2.  Engineering metal ion coordination to regulate amyloid fibril assembly and toxicity.

Authors:  Jijun Dong; Jeffrey M Canfield; Anil K Mehta; Jacob E Shokes; Bo Tian; W Seth Childers; James A Simmons; Zixu Mao; Robert A Scott; Kurt Warncke; David G Lynn
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-08       Impact factor: 11.205

3.  Cross-strand pairing and amyloid assembly.

Authors:  Yan Liang; Sai Venkatesh Pingali; Ashutosh S Jogalekar; James P Snyder; Pappannan Thiyagarajan; David G Lynn
Journal:  Biochemistry       Date:  2008-08-30       Impact factor: 3.162

4.  X-ray diffraction studies on amyloid filaments.

Authors:  E D Eanes; G G Glenner
Journal:  J Histochem Cytochem       Date:  1968-11       Impact factor: 2.479

5.  Development of protein, peptide, and small molecule catalysts using catalysis-based selection strategies.

Authors:  Fujie Tanaka
Journal:  Chem Rec       Date:  2005       Impact factor: 6.771

6.  Amyloid fibril formation by A beta 16-22, a seven-residue fragment of the Alzheimer's beta-amyloid peptide, and structural characterization by solid state NMR.

Authors:  J J Balbach; Y Ishii; O N Antzutkin; R D Leapman; N W Rizzo; F Dyda; J Reed; R Tycko
Journal:  Biochemistry       Date:  2000-11-14       Impact factor: 3.162

7.  Modulating amyloid self-assembly and fibril morphology with Zn(II).

Authors:  Jijun Dong; Jacob E Shokes; Robert A Scott; David G Lynn
Journal:  J Am Chem Soc       Date:  2006-03-22       Impact factor: 15.419

8.  The influence of protein dynamics on the success of computational enzyme design.

Authors:  Jory Z Ruscio; Jonathan E Kohn; K Aurelia Ball; Teresa Head-Gordon
Journal:  J Am Chem Soc       Date:  2009-10-07       Impact factor: 15.419

Review 9.  The prion's elusive reason for being.

Authors:  Adriano Aguzzi; Frank Baumann; Juliane Bremer
Journal:  Annu Rev Neurosci       Date:  2008       Impact factor: 12.449

10.  Short peptides self-assemble to produce catalytic amyloids.

Authors:  Caroline M Rufo; Yurii S Moroz; Olesia V Moroz; Jan Stöhr; Tyler A Smith; Xiaozhen Hu; William F DeGrado; Ivan V Korendovych
Journal:  Nat Chem       Date:  2014-03-16       Impact factor: 24.427

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  27 in total

1.  Design of multi-phase dynamic chemical networks.

Authors:  Chenrui Chen; Junjun Tan; Ming-Chien Hsieh; Ting Pan; Jay T Goodwin; Anil K Mehta; Martha A Grover; David G Lynn
Journal:  Nat Chem       Date:  2017-02-27       Impact factor: 24.427

2.  Carbonyl Sulfide as a Prebiotic Activation Agent for Stereo- and Sequence-Selective, Amyloid-Templated Peptide Elongation.

Authors:  Radoslaw Bomba; Saroj K Rout; Matthias Bütikofer; Witek Kwiatkowski; Roland Riek; Jason Greenwald
Journal:  Orig Life Evol Biosph       Date:  2019-12-16       Impact factor: 1.950

Review 3.  Catalytic peptide assemblies.

Authors:  O Zozulia; M A Dolan; I V Korendovych
Journal:  Chem Soc Rev       Date:  2018-05-21       Impact factor: 54.564

4.  Copper-Containing Catalytic Amyloids Promote Phosphoester Hydrolysis and Tandem Reactions.

Authors:  Zsófia Lengyel; Caroline M Rufo; Yurii S Moroz; Olga V Makhlynets; Ivan V Korendovych
Journal:  ACS Catal       Date:  2017-11-22       Impact factor: 13.084

5.  Non-proteinaceous hydrolase comprised of a phenylalanine metallo-supramolecular amyloid-like structure.

Authors:  Pandeeswar Makam; Sharma S R K C Yamijala; Kai Tao; Linda J W Shimon; David S Eisenberg; Michael R Sawaya; Bryan M Wong; Ehud Gazit
Journal:  Nat Catal       Date:  2019-09-23

6.  Bind3P: Optimization of a Water Model Based on Host-Guest Binding Data.

Authors:  Jian Yin; Niel M Henriksen; Hari S Muddana; Michael K Gilson
Journal:  J Chem Theory Comput       Date:  2018-06-22       Impact factor: 6.006

7.  Semi-Rationally Designed Short Peptides Self-Assemble and Bind Hemin to Promote Cyclopropanation.

Authors:  Oleksii Zozulia; Ivan V Korendovych
Journal:  Angew Chem Int Ed Engl       Date:  2020-03-17       Impact factor: 15.336

Review 8.  Biomolecular Assemblies: Moving from Observation to Predictive Design.

Authors:  Corey J Wilson; Andreas S Bommarius; Julie A Champion; Yury O Chernoff; David G Lynn; Anant K Paravastu; Chen Liang; Ming-Chien Hsieh; Jennifer M Heemstra
Journal:  Chem Rev       Date:  2018-10-03       Impact factor: 60.622

9.  Minimalist de novo Design of Protein Catalysts.

Authors:  Liam R Marshall; Oleksii Zozulia; Zsofia Lengyel-Zhand; Ivan V Korendovych
Journal:  ACS Catal       Date:  2019-09-13       Impact factor: 13.084

10.  Artificial Intracellular Filaments.

Authors:  Zhaoqianqi Feng; Huaimin Wang; Fengbin Wang; Younghoon Oh; Cristina Berciu; Qiang Cui; Edward H Egelman; Bing Xu
Journal:  Cell Rep Phys Sci       Date:  2020-07-01
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