Literature DB >> 21443858

Recent progress in the study of G protein-coupled receptors with molecular dynamics computer simulations.

Alan Grossfield1.   

Abstract

G protein-coupled receptors (GPCRs) are a large, biomedically important family of proteins, and the recent explosion of new high-resolution structural information about them has provided an enormous opportunity for computational modeling to make major contributions. In particular, molecular dynamics simulations have become a driving factor in many areas of GPCR biophysics, improving our understanding of lipid-protein interaction, activation mechanisms, and internal hydration. Given that computers will continue to get faster and more structures will be solved, the importance of computational methods will only continue to grow, particularly as simulation research is more closely coupled to experiment.
Copyright © 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 21443858     DOI: 10.1016/j.bbamem.2011.03.010

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  29 in total

1.  Methods for the Development of In Silico GPCR Models.

Authors:  Paula Morales; Dow P Hurst; Patricia H Reggio
Journal:  Methods Enzymol       Date:  2017-07-14       Impact factor: 1.600

2.  Molecular Dynamics Methodologies for Probing Cannabinoid Ligand/Receptor Interaction.

Authors:  Diane L Lynch; Dow P Hurst; Derek M Shore; Mike C Pitman; Patricia H Reggio
Journal:  Methods Enzymol       Date:  2017-07-04       Impact factor: 1.600

3.  Accelerated structure-based design of chemically diverse allosteric modulators of a muscarinic G protein-coupled receptor.

Authors:  Yinglong Miao; Dahlia Anne Goldfeld; Ee Von Moo; Patrick M Sexton; Arthur Christopoulos; J Andrew McCammon; Celine Valant
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-06       Impact factor: 11.205

Review 4.  Extramembranous Regions in G Protein-Coupled Receptors: Cinderella in Receptor Biology?

Authors:  Sreetama Pal; Amitabha Chattopadhyay
Journal:  J Membr Biol       Date:  2019-08-30       Impact factor: 1.843

Review 5.  Quantum Mechanical and Molecular Mechanics Modeling of Membrane-Embedded Rhodopsins.

Authors:  Mikhail N Ryazantsev; Dmitrii M Nikolaev; Andrey V Struts; Michael F Brown
Journal:  J Membr Biol       Date:  2019-09-30       Impact factor: 1.843

Review 6.  Showcasing modern molecular dynamics simulations of membrane proteins through G protein-coupled receptors.

Authors:  Jennifer M Johnston; Marta Filizola
Journal:  Curr Opin Struct Biol       Date:  2011-07-19       Impact factor: 6.809

7.  Interactions between fengycin and model bilayers quantified by coarse-grained molecular dynamics.

Authors:  Joshua N Horn; Aaron Cravens; Alan Grossfield
Journal:  Biophys J       Date:  2013-10-01       Impact factor: 4.033

8.  A Streamlined, General Approach for Computing Ligand Binding Free Energies and Its Application to GPCR-Bound Cholesterol.

Authors:  Reza Salari; Thomas Joseph; Ruchi Lohia; Jérôme Hénin; Grace Brannigan
Journal:  J Chem Theory Comput       Date:  2018-11-13       Impact factor: 6.006

9.  Multiscale design of coarse-grained elastic network-based potentials for the μ opioid receptor.

Authors:  Mathieu Fossépré; Laurence Leherte; Aatto Laaksonen; Daniel P Vercauteren
Journal:  J Mol Model       Date:  2016-08-26       Impact factor: 1.810

Review 10.  Structure-function studies with G protein-coupled receptors as a paradigm for improving drug discovery and development of therapeutics.

Authors:  Patrick M McNeely; Andrea N Naranjo; Anne S Robinson
Journal:  Biotechnol J       Date:  2012-12       Impact factor: 4.677

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