Literature DB >> 28748932

Can we predict protein from mRNA levels?

Nikolaus Fortelny1,2,3, Christopher M Overall1,3,4, Paul Pavlidis2,5, Gabriela V Cohen Freue6.   

Abstract

Year:  2017        PMID： 28748932     DOI： 10.1038/nature22293

Source DB:  PubMed          Journal:  Nature        ISSN： 0028-0836            Impact factor:   49.962


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  6 in total

1.  Global quantification of mammalian gene expression control.

Authors:  Björn Schwanhäusser; Dorothea Busse; Na Li; Gunnar Dittmar; Johannes Schuchhardt; Jana Wolf; Wei Chen; Matthias Selbach
Journal:  Nature       Date:  2011-05-19       Impact factor: 49.962

2.  Gene expression. Statistics requantitates the central dogma.

Authors:  Jingyi Jessica Li; Mark D Biggin
Journal:  Science       Date:  2015-03-06       Impact factor: 47.728

3.  Mass-spectrometry-based draft of the human proteome.

Authors:  Mathias Wilhelm; Judith Schlegl; Hannes Hahne; Amin Moghaddas Gholami; Marcus Lieberenz; Mikhail M Savitski; Emanuel Ziegler; Lars Butzmann; Siegfried Gessulat; Harald Marx; Toby Mathieson; Simone Lemeer; Karsten Schnatbaum; Ulf Reimer; Holger Wenschuh; Martin Mollenhauer; Julia Slotta-Huspenina; Joos-Hendrik Boese; Marcus Bantscheff; Anja Gerstmair; Franz Faerber; Bernhard Kuster
Journal:  Nature       Date:  2014-05-29       Impact factor: 49.962

Review 4.  On the Dependency of Cellular Protein Levels on mRNA Abundance.

Authors:  Yansheng Liu; Andreas Beyer; Ruedi Aebersold
Journal:  Cell       Date:  2016-04-21       Impact factor: 41.582

5.  System wide analyses have underestimated protein abundances and the importance of transcription in mammals.

Authors:  Jingyi Jessica Li; Peter J Bickel; Mark D Biggin
Journal:  PeerJ       Date:  2014-02-27       Impact factor: 2.984

6.  Gene-specific correlation of RNA and protein levels in human cells and tissues.

Authors:  Fredrik Edfors; Frida Danielsson; Björn M Hallström; Lukas Käll; Emma Lundberg; Fredrik Pontén; Björn Forsström; Mathias Uhlén
Journal:  Mol Syst Biol       Date:  2016-10-20       Impact factor: 11.429
  6 in total
  61 in total

Review 1.  Moonshot Objectives: Catalyze New Scientific Breakthroughs-Proteogenomics.

Authors:  Karin D Rodland; Paul Piehowski; Richard D Smith
Journal:  Cancer J       Date:  2018 May/Jun       Impact factor: 3.360

2.  Wilhelm et al. reply.

Authors:  Mathias Wilhelm; Hannes Hahne; Mikhail Savitski; Harald Marx; Simone Lemeer; Marcus Bantscheff; Bernhard Kuster
Journal:  Nature       Date:  2017-07-26       Impact factor: 49.962

3.  Integrating Transcriptomic Data with Mechanistic Systems Pharmacology Models for Virtual Drug Combination Trials.

Authors:  Anne Marie Barrette; Mehdi Bouhaddou; Marc R Birtwistle
Journal:  ACS Chem Neurosci       Date:  2017-10-06       Impact factor: 4.418

4.  Credentialing Individual Samples for Proteogenomic Analysis.

Authors:  Wei Zhao; Jun Li; Rehan Akbani; Han Liang; Gordon B Mills
Journal:  Mol Cell Proteomics       Date:  2018-05-01       Impact factor: 5.911

5.  DIPPER, a spatiotemporal proteomics atlas of human intervertebral discs for exploring ageing and degeneration dynamics.

Authors:  Vivian Tam; Peikai Chen; Anita Yee; Nestor Solis; Theo Klein; Mateusz Kudelko; Rakesh Sharma; Wilson Cw Chan; Christopher M Overall; Lisbet Haglund; Pak C Sham; Kathryn Song Eng Cheah; Danny Chan
Journal:  Elife       Date:  2020-12-31       Impact factor: 8.140

6.  Quantitative Proteome Profiling Reveals Cellobiose-Dependent Protein Processing and Export Pathways for the Lignocellulolytic Response in Neurospora crassa.

Authors:  Dan Liu; Yisong Liu; Duoduo Zhang; Xiaoting Chen; Qian Liu; Bentao Xiong; Lihui Zhang; Linfang Wei; Yifan Wang; Hao Fang; Johannes Liesche; Yahong Wei; N Louise Glass; Zhiqi Hao; Shaolin Chen
Journal:  Appl Environ Microbiol       Date:  2020-07-20       Impact factor: 4.792

7.  The Human Plasma Proteome Draft of 2017: Building on the Human Plasma PeptideAtlas from Mass Spectrometry and Complementary Assays.

Authors:  Jochen M Schwenk; Gilbert S Omenn; Zhi Sun; David S Campbell; Mark S Baker; Christopher M Overall; Ruedi Aebersold; Robert L Moritz; Eric W Deutsch
Journal:  J Proteome Res       Date:  2017-10-10       Impact factor: 4.466

Review 8.  Heterogeneity and specialized functions of translation machinery: from genes to organisms.

Authors:  Naomi R Genuth; Maria Barna
Journal:  Nat Rev Genet       Date:  2018-07       Impact factor: 53.242

9.  Progress on the HUPO Draft Human Proteome: 2017 Metrics of the Human Proteome Project.

Authors:  Gilbert S Omenn; Lydie Lane; Emma K Lundberg; Christopher M Overall; Eric W Deutsch
Journal:  J Proteome Res       Date:  2017-10-09       Impact factor: 4.466

10.  Differences between Dorsal Root and Trigeminal Ganglion Nociceptors in Mice Revealed by Translational Profiling.

Authors:  Salim Megat; Pradipta R Ray; Diana Tavares-Ferreira; Jamie K Moy; Ishwarya Sankaranarayanan; Andi Wanghzou; Tzu Fang Lou; Paulino Barragan-Iglesias; Zachary T Campbell; Gregory Dussor; Theodore J Price
Journal:  J Neurosci       Date:  2019-06-28       Impact factor: 6.167
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