Literature DB >> 28717579

Deep-learning based, automated segmentation of macular edema in optical coherence tomography.

Cecilia S Lee1, Ariel J Tyring1, Nicolaas P Deruyter2, Yue Wu1, Ariel Rokem3, Aaron Y Lee1,4,3.   

Abstract

Evaluation of clinical images is essential for diagnosis in many specialties. Therefore the development of computer vision algorithms to help analyze biomedical images will be important. In ophthalmology, optical coherence tomography (OCT) is critical for managing retinal conditions. We developed a convolutional neural network (CNN) that detects intraretinal fluid (IRF) on OCT in a manner indistinguishable from clinicians. Using 1,289 OCT images, the CNN segmented images with a 0.911 cross-validated Dice coefficient, compared with segmentations by experts. Additionally, the agreement between experts and between experts and CNN were similar. Our results reveal that CNN can be trained to perform automated segmentations of clinically relevant image features.

Entities:  

Keywords:  (110.4500) Optical coherence tomography; (150.1135) Algorithms

Year:  2017        PMID: 28717579      PMCID: PMC5508840          DOI: 10.1364/BOE.8.003440

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  25 in total

Review 1.  Macular edema: definition and basic concepts.

Authors:  Gabriel Coscas; José Cunha-Vaz; Gisèle Soubrane
Journal:  Dev Ophthalmol       Date:  2010-08-10

2.  Computerized assessment of intraretinal and subretinal fluid regions in spectral-domain optical coherence tomography images of the retina.

Authors:  Yalin Zheng; Jayashree Sahni; Claudio Campa; Alexandros N Stangos; Ankur Raj; Simon P Harding
Journal:  Am J Ophthalmol       Date:  2012-10-27       Impact factor: 5.258

3.  Optical coherence tomography in photodynamic therapy for subfoveal choroidal neovascularisation secondary to age related macular degeneration: a cross sectional study.

Authors:  J Sahni; P Stanga; D Wong; S Harding
Journal:  Br J Ophthalmol       Date:  2005-03       Impact factor: 4.638

4.  Segmentation of the foveal microvasculature using deep learning networks.

Authors:  Pavle Prentašic; Morgan Heisler; Zaid Mammo; Sieun Lee; Andrew Merkur; Eduardo Navajas; Mirza Faisal Beg; Marinko Šarunic; Sven Loncaric
Journal:  J Biomed Opt       Date:  2016-07-01       Impact factor: 3.170

5.  Comparing humans and deep learning performance for grading AMD: A study in using universal deep features and transfer learning for automated AMD analysis.

Authors:  Philippe Burlina; Katia D Pacheco; Neil Joshi; David E Freund; Neil M Bressler
Journal:  Comput Biol Med       Date:  2017-01-27       Impact factor: 4.589

6.  Automatic Feature Learning to Grade Nuclear Cataracts Based on Deep Learning.

Authors:  Xinting Gao; Stephen Lin; Tien Yin Wong
Journal:  IEEE Trans Biomed Eng       Date:  2015-06-11       Impact factor: 4.538

7.  Relationship between optical coherence tomography-measured central retinal thickness and visual acuity in diabetic macular edema.

Authors:  David J Browning; Adam R Glassman; Lloyd Paul Aiello; Roy W Beck; David M Brown; Donald S Fong; Neil M Bressler; Ronald P Danis; James L Kinyoun; Quan Dong Nguyen; Abdhish R Bhavsar; Justin Gottlieb; Dante J Pieramici; Michael E Rauser; Rajendra S Apte; Jennifer I Lim; Päivi H Miskala
Journal:  Ophthalmology       Date:  2006-11-21       Impact factor: 12.079

8.  Automated Segmentation of Hyperintense Regions in FLAIR MRI Using Deep Learning.

Authors:  Panagiotis Korfiatis; Timothy L Kline; Bradley J Erickson
Journal:  Tomography       Date:  2016-12

9.  Machine learning methods in chemoinformatics.

Authors:  John B O Mitchell
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2014-09-01

10.  Three-dimensional Segmentation of Retinal Cysts from Spectral-domain Optical Coherence Tomography Images by the Use of Three-dimensional Curvelet Based K-SVD.

Authors:  Mahdad Esmaeili; Alireza Mehri Dehnavi; Hossein Rabbani; Fedra Hajizadeh
Journal:  J Med Signals Sens       Date:  2016 Jul-Sep
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  77 in total

1.  Artificial Intelligence Screening for Diabetic Retinopathy: the Real-World Emerging Application.

Authors:  Valentina Bellemo; Gilbert Lim; Tyler Hyungtaek Rim; Gavin S W Tan; Carol Y Cheung; SriniVas Sadda; Ming-Guang He; Adnan Tufail; Mong Li Lee; Wynne Hsu; Daniel Shu Wei Ting
Journal:  Curr Diab Rep       Date:  2019-07-31       Impact factor: 4.810

2.  Development and validation of a deep learning algorithm for distinguishing the nonperfusion area from signal reduction artifacts on OCT angiography.

Authors:  Yukun Guo; Tristan T Hormel; Honglian Xiong; Bingjie Wang; Acner Camino; Jie Wang; David Huang; Thomas S Hwang; Yali Jia
Journal:  Biomed Opt Express       Date:  2019-06-12       Impact factor: 3.732

3.  Intraretinal fluid identification via enhanced maps using optical coherence tomography images.

Authors:  Plácido L Vidal; Joaquim de Moura; Jorge Novo; Manuel G Penedo; Marcos Ortega
Journal:  Biomed Opt Express       Date:  2018-09-11       Impact factor: 3.732

4.  A renaissance of teleophthalmology through artificial intelligence.

Authors:  Edward Korot; Edward Wood; Adam Weiner; Dawn A Sim; Michael Trese
Journal:  Eye (Lond)       Date:  2019-01-08       Impact factor: 3.775

5.  Deep learning-based automated detection of retinal diseases using optical coherence tomography images.

Authors:  Feng Li; Hua Chen; Zheng Liu; Xue-Dian Zhang; Min-Shan Jiang; Zhi-Zheng Wu; Kai-Qian Zhou
Journal:  Biomed Opt Express       Date:  2019-11-11       Impact factor: 3.732

6.  Deep learning segmentation for optical coherence tomography measurements of the lower tear meniscus.

Authors:  Hannes Stegmann; René M Werkmeister; Martin Pfister; Gerhard Garhöfer; Leopold Schmetterer; Valentin Aranha Dos Santos
Journal:  Biomed Opt Express       Date:  2020-02-20       Impact factor: 3.732

7.  Real-time retinal layer segmentation of OCT volumes with GPU accelerated inferencing using a compressed, low-latency neural network.

Authors:  Svetlana Borkovkina; Acner Camino; Worawee Janpongsri; Marinko V Sarunic; Yifan Jian
Journal:  Biomed Opt Express       Date:  2020-06-24       Impact factor: 3.732

Review 8.  Challenges and opportunities in clinical translation of biomedical optical spectroscopy and imaging.

Authors:  Brian C Wilson; Michael Jermyn; Frederic Leblond
Journal:  J Biomed Opt       Date:  2018-03       Impact factor: 3.170

9.  Multilayered Deep Structure Tensor Delaunay Triangulation and Morphing Based Automated Diagnosis and 3D Presentation of Human Macula.

Authors:  Taimur Hassan; M Usman Akram; Mahmood Akhtar; Shoab Ahmad Khan; Ubaidullah Yasin
Journal:  J Med Syst       Date:  2018-10-04       Impact factor: 4.460

10.  Beyond Performance Metrics: Automatic Deep Learning Retinal OCT Analysis Reproduces Clinical Trial Outcome.

Authors:  Jessica Loo; Traci E Clemons; Emily Y Chew; Martin Friedlander; Glenn J Jaffe; Sina Farsiu
Journal:  Ophthalmology       Date:  2019-12-23       Impact factor: 12.079

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