Literature DB >> 28708419

Mechanisms of the Formation of Adenine, Guanine, and Their Analogues in UV-Irradiated Mixed NH3:H2O Molecular Ices Containing Purine.

Partha P Bera1,2, Tamar Stein3,4, Martin Head-Gordon3,4, Timothy J Lee1.   

Abstract

We investigated the formation mechanisms of the nucleobases adenine and guanine and the nucleobase analogues hypoxanthine, xanthine, isoguanine, and 2,6-diaminopurine in a UV-irradiated mixed 10:1 H2O:NH3 ice seeded with precursor purine by using ab initio and density functional theory computations. Our quantum chemical investigations suggest that a multistep reaction mechanism involving purine cation, hydroxyl and amino radicals, together with water and ammonia, explains the experimentally obtained products in an independent study. The relative abundances of these products appear to largely follow from relative thermodynamic stabilities. The key role of the purine cation is likely to be the reason why purine is not functionalized in pure ammonia ice, where cations are promptly neutralized by free electrons from NH3 ionization. Amine group addition to purine is slightly favored over hydroxyl group attachment based on energetics, but hydroxyl is much more abundant due to higher abundance of H2O. The amino group is preferentially attached to the 6 position, giving 6-aminopurine, that is, adenine, while the hydroxyl group is preferentially attached to the 2 position, leading to 2-hydroxypurine. A second substitution by hydroxyl or amino group occurs at either the 6 or the 2 position depending on the first substitution. Given that H2O is far more abundant than NH3 in the experimentally studied ices (as well as based on interstellar abundances), xanthine and isoguanine are expected to be the most abundant bi-substituted photoproducts. Key Words: Astrophysical ice-Abiotic organic synthesis-Nucleic acids-Origin of life-RNA world. Astrobiology 17, 771-785.

Entities:  

Mesh:

Substances:

Year:  2017        PMID: 28708419      PMCID: PMC5734622          DOI: 10.1089/ast.2016.1614

Source DB:  PubMed          Journal:  Astrobiology        ISSN: 1557-8070            Impact factor:   4.335


  34 in total

1.  (G-H)*-C and G-(C-H)* radicals derived from the guanine.cytosine base pair cause DNA subunit lesions.

Authors:  Partha Pratim Bera; Henry F Schaefer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-06       Impact factor: 11.205

2.  The deprotonated guanine-cytosine base pair.

Authors:  Maria C Lind; Partha P Bera; Nancy A Richardson; Steven E Wheeler; Henry F Schaefer
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-09       Impact factor: 11.205

Review 3.  Photosynthesis and photo-stability of nucleic acids in prebiotic extraterrestrial environments.

Authors:  Scott A Sandford; Partha P Bera; Timothy J Lee; Christopher K Materese; Michel Nuevo
Journal:  Top Curr Chem       Date:  2015

4.  ωB97M-V: A combinatorially optimized, range-separated hybrid, meta-GGA density functional with VV10 nonlocal correlation.

Authors:  Narbe Mardirossian; Martin Head-Gordon
Journal:  J Chem Phys       Date:  2016-06-07       Impact factor: 3.488

5.  Evidence for extraterrestrial amino-acids and hydrocarbons in the Murchison meteorite.

Authors:  K Kvenvolden; J Lawless; K Pering; E Peterson; J Flores; C Ponnamperuma; I R Kaplan; C Moore
Journal:  Nature       Date:  1970-12-05       Impact factor: 49.962

6.  Prebiotic cytosine synthesis: a critical analysis and implications for the origin of life.

Authors:  R Shapiro
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-13       Impact factor: 11.205

7.  Carbonaceous meteorites as a source of sugar-related organic compounds for the early Earth.

Authors:  G Cooper; N Kimmich; W Belisle; J Sarinana; K Brabham; L Garrel
Journal:  Nature       Date:  2001 Dec 20-27       Impact factor: 49.962

Review 8.  Functions and regulation of RNA editing by ADAR deaminases.

Authors:  Kazuko Nishikura
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

9.  Chemical evolution: the mechanism of the formation of adenine under prebiotic conditions.

Authors:  Debjani Roy; Katayoun Najafian; Paul von Ragué Schleyer
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-19       Impact factor: 11.205

10.  Dynamics study of the OH + NH3 hydrogen abstraction reaction using QCT calculations based on an analytical potential energy surface.

Authors:  M Monge-Palacios; J C Corchado; J Espinosa-Garcia
Journal:  J Chem Phys       Date:  2013-06-07       Impact factor: 3.488

View more
  1 in total

Review 1.  The Nitrogen Heterocycle Content of Meteorites and Their Significance for the Origin of Life.

Authors:  Zita Martins
Journal:  Life (Basel)       Date:  2018-07-11
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.