Literature DB >> 28706309

The Draft Genome of Globodera ellingtonae.

Wendy S Phillips1, Dana K Howe2, Amanda M V Brown2, Sebastian Eves-van den Akker3, Levi Dettwyler2, Amy B Peetz1, Dee R Denver2, Inga A Zasada1.   

Abstract

Globodera ellingtonae is a newly described potato cyst nematode (PCN) found in Idaho, Oregon, and Argentina. Here, we present a genome assembly for G. ellingtonae, a relative of the quarantine nematodes G. pallida and G. rostochiensis, produced using data from Illumina and Pacific Biosciences DNA sequencing technologies.

Entities:  

Keywords:  Globodera ellingtonae; genome; potato cyst nematode

Year:  2017        PMID： 28706309      PMCID： PMC5507130          DOI： 10.21307/jofnem-2017-054

Source DB:  PubMed          Journal:  J Nematol        ISSN： 0022-300X            Impact factor:   1.402


  8 in total

1.  High-quality draft assemblies of mammalian genomes from massively parallel sequence data.

Authors:  Sante Gnerre; Iain Maccallum; Dariusz Przybylski; Filipe J Ribeiro; Joshua N Burton; Bruce J Walker; Ted Sharpe; Giles Hall; Terrance P Shea; Sean Sykes; Aaron M Berlin; Daniel Aird; Maura Costello; Riza Daza; Louise Williams; Robert Nicol; Andreas Gnirke; Chad Nusbaum; Eric S Lander; David B Jaffe
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-27       Impact factor: 11.205

2.  CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes.

Authors:  Genis Parra; Keith Bradnam; Ian Korf
Journal:  Bioinformatics       Date:  2007-03-01       Impact factor: 6.937

3.  Description of Globodera ellingtonae n. sp. (Nematoda: Heteroderidae) from Oregon.

Authors:  Zafar A Handoo; Lynn K Carta; Andrea M Skantar; David J Chitwood
Journal:  J Nematol       Date:  2012-03       Impact factor: 1.402

4.  Hybrid error correction and de novo assembly of single-molecule sequencing reads.

Authors:  Sergey Koren; Michael C Schatz; Brian P Walenz; Jeffrey Martin; Jason T Howard; Ganeshkumar Ganapathy; Zhong Wang; David A Rasko; W Richard McCombie; Erich D Jarvis
Journal:  Nat Biotechnol       Date:  2012-07-01       Impact factor: 54.908

5.  Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology.

Authors:  Adam C English; Stephen Richards; Yi Han; Min Wang; Vanesa Vee; Jiaxin Qu; Xiang Qin; Donna M Muzny; Jeffrey G Reid; Kim C Worley; Richard A Gibbs
Journal:  PLoS One       Date:  2012-11-21       Impact factor: 3.240

6.  The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode.

Authors:  James A Cotton; Catherine J Lilley; Laura M Jones; Taisei Kikuchi; Adam J Reid; Peter Thorpe; Isheng J Tsai; Helen Beasley; Vivian Blok; Peter J A Cock; Sebastian Eves-van den Akker; Nancy Holroyd; Martin Hunt; Sophie Mantelin; Hardeep Naghra; Arnab Pain; Juan E Palomares-Rius; Magdalena Zarowiecki; Matthew Berriman; John T Jones; Peter E Urwin
Journal:  Genome Biol       Date:  2014-03-03       Impact factor: 13.583

7.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

8.  The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence.

Authors:  Sebastian Eves-van den Akker; Dominik R Laetsch; Peter Thorpe; Catherine J Lilley; Etienne G J Danchin; Martine Da Rocha; Corinne Rancurel; Nancy E Holroyd; James A Cotton; Amir Szitenberg; Eric Grenier; Josselin Montarry; Benjamin Mimee; Marc-Olivier Duceppe; Ian Boyes; Jessica M C Marvin; Laura M Jones; Hazijah B Yusup; Joël Lafond-Lapalme; Magali Esquibet; Michael Sabeh; Michael Rott; Hein Overmars; Anna Finkers-Tomczak; Geert Smant; Georgios Koutsovoulos; Vivian Blok; Sophie Mantelin; Peter J A Cock; Wendy Phillips; Bernard Henrissat; Peter E Urwin; Mark Blaxter; John T Jones
Journal:  Genome Biol       Date:  2016-06-10       Impact factor: 13.583
  8 in total
  7 in total

1.  The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes.

Authors:  Rick Masonbrink; Tom R Maier; Usha Muppirala; Arun S Seetharam; Etienne Lord; Parijat S Juvale; Jeremy Schmutz; Nathan T Johnson; Dmitry Korkin; Melissa G Mitchum; Benjamin Mimee; Sebastian Eves-van den Akker; Matthew Hudson; Andrew J Severin; Thomas J Baum
Journal:  BMC Genomics       Date:  2019-02-07       Impact factor: 3.969

2.  SCNBase: a genomics portal for the soybean cyst nematode (Heterodera glycines).

Authors:  Rick Masonbrink; Tom R Maier; Arun S Seetharam; Parijat S Juvale; Levi Baber; Thomas J Baum; Andrew J Severin
Journal:  Database (Oxford)       Date:  2019-01-01       Impact factor: 3.451

3.  Potato cyst nematodes Globodera rostochiensis and G. pallida.

Authors:  James A Price; Danny Coyne; Vivian C Blok; John T Jones
Journal:  Mol Plant Pathol       Date:  2021-03-11       Impact factor: 5.663

4.  Toward genetic modification of plant-parasitic nematodes: delivery of macromolecules to adults and expression of exogenous mRNA in second stage juveniles.

Authors:  Olaf Kranse; Helen Beasley; Sally Adams; Andre Pires-daSilva; Christopher Bell; Catherine J Lilley; Peter E Urwin; David Bird; Eric Miska; Geert Smant; Godelieve Gheysen; John Jones; Mark Viney; Pierre Abad; Thomas R Maier; Thomas J Baum; Shahid Siddique; Valerie Williamson; Alper Akay; Sebastian Eves-van den Akker
Journal:  G3 (Bethesda)       Date:  2021-02-09       Impact factor: 3.154

5.  Belowground Chemical Interactions: An Insight Into Host-Specific Behavior of Globodera spp. Hatched in Root Exudates From Potato and Its Wild Relative, Solanum sisymbriifolium.

Authors:  Joanna Kud; Syamkumar Sivasankara Pillai; Gabriel Raber; Allan Caplan; Joseph C Kuhl; Fangming Xiao; Louise-Marie Dandurand
Journal:  Front Plant Sci       Date:  2022-01-12       Impact factor: 5.753

6.  Novel global effector mining from the transcriptome of early life stages of the soybean cyst nematode Heterodera glycines.

Authors:  Michael Gardner; Andi Dhroso; Nathan Johnson; Eric L Davis; Thomas J Baum; Dmitry Korkin; Melissa G Mitchum
Journal:  Sci Rep       Date:  2018-02-06       Impact factor: 4.379

7.  The genome of the migratory nematode, Radopholus similis, reveals signatures of close association to the sedentary cyst nematodes.

Authors:  Reny Mathew; Charles H Opperman
Journal:  PLoS One       Date:  2019-10-25       Impact factor: 3.240
  7 in total

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