Literature DB >> 28698365

Stable membrane orientations of small dual-topology membrane proteins.

Nir Fluman1, Victor Tobiasson2,3, Gunnar von Heijne1,3.   

Abstract

The topologies of α-helical membrane proteins are generally thought to be determined during their cotranslational insertion into the membrane. It is typically assumed that membrane topologies remain static after this process has ended. Recent findings, however, question this static view by suggesting that some parts of, or even the whole protein, can reorient in the membrane on a biologically relevant time scale. Here, we focus on antiparallel homo- or heterodimeric small multidrug resistance proteins and examine whether the individual monomers can undergo reversible topological inversion (flip flop) in the membrane until they are trapped in a fixed orientation by dimerization. By perturbing dimerization using various means, we show that the membrane orientation of a monomer is unaffected by the presence or absence of its dimerization partner. Thus, membrane-inserted monomers attain their final orientations independently of dimerization, suggesting that wholesale topological inversion is an unlikely event in vivo.

Keywords:  membrane protein; membrane protein folding; membrane topology

Mesh:

Substances:

Year:  2017        PMID: 28698365      PMCID: PMC5544329          DOI: 10.1073/pnas.1706905114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  40 in total

1.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

2.  Length recognition at the N-terminal tail for the initiation of FtsH-mediated proteolysis.

Authors:  S Chiba; Y Akiyama; H Mori; E Matsuo; K Ito
Journal:  EMBO Rep       Date:  2000-07       Impact factor: 8.807

3.  Control of membrane protein topology by a single C-terminal residue.

Authors:  Susanna Seppälä; Joanna S Slusky; Pilar Lloris-Garcerá; Mikaela Rapp; Gunnar von Heijne
Journal:  Science       Date:  2010-05-27       Impact factor: 47.728

4.  Transmembrane protein topology mapping by the substituted cysteine accessibility method (SCAM(TM)): application to lipid-specific membrane protein topogenesis.

Authors:  Mikhail Bogdanov; Wei Zhang; Jun Xie; William Dowhan
Journal:  Methods       Date:  2005-06       Impact factor: 3.608

5.  Emulating membrane protein evolution by rational design.

Authors:  Mikaela Rapp; Susanna Seppälä; Erik Granseth; Gunnar von Heijne
Journal:  Science       Date:  2007-01-25       Impact factor: 47.728

6.  On parallel and antiparallel topology of a homodimeric multidrug transporter.

Authors:  Misha Soskine; Shirley Mark; Naama Tayer; Roy Mizrachi; Shimon Schuldiner
Journal:  J Biol Chem       Date:  2006-09-26       Impact factor: 5.157

7.  In vitro reconstitution of lipid-dependent dual topology and postassembly topological switching of a membrane protein.

Authors:  Heidi Vitrac; Mikhail Bogdanov; William Dowhan
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-20       Impact factor: 11.205

8.  Antiparallel dimers of the small multidrug resistance protein EmrE are more stable than parallel dimers.

Authors:  Pilar Lloris-Garcerá; Frans Bianchi; Joanna S G Slusky; Susanna Seppälä; Daniel O Daley; Gunnar von Heijne
Journal:  J Biol Chem       Date:  2012-06-14       Impact factor: 5.157

9.  The distribution of positively charged residues in bacterial inner membrane proteins correlates with the trans-membrane topology.

Authors:  G Heijne
Journal:  EMBO J       Date:  1986-11       Impact factor: 11.598

10.  Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.

Authors:  Fabian Sievers; Andreas Wilm; David Dineen; Toby J Gibson; Kevin Karplus; Weizhong Li; Rodrigo Lopez; Hamish McWilliam; Michael Remmert; Johannes Söding; Julie D Thompson; Desmond G Higgins
Journal:  Mol Syst Biol       Date:  2011-10-11       Impact factor: 11.429

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  14 in total

Review 1.  Lipid-Assisted Membrane Protein Folding and Topogenesis.

Authors:  William Dowhan; Heidi Vitrac; Mikhail Bogdanov
Journal:  Protein J       Date:  2019-06       Impact factor: 2.371

2.  Contribution of Cotranslational Folding Defects to Membrane Protein Homeostasis.

Authors:  Francis J Roushar; Timothy C Gruenhagen; Wesley D Penn; Bian Li; Jens Meiler; Beata Jastrzebska; Jonathan P Schlebach
Journal:  J Am Chem Soc       Date:  2018-12-26       Impact factor: 15.419

Review 3.  Dynamics of Co-translational Membrane Protein Integration and Translocation via the Sec Translocon.

Authors:  Michiel J M Niesen; Matthew H Zimmer; Thomas F Miller
Journal:  J Am Chem Soc       Date:  2020-03-13       Impact factor: 15.419

4.  Improving membrane protein expression by optimizing integration efficiency.

Authors:  Michiel J M Niesen; Stephen S Marshall; Thomas F Miller; William M Clemons
Journal:  J Biol Chem       Date:  2017-09-16       Impact factor: 5.157

Review 5.  How physical forces drive the process of helical membrane protein folding.

Authors:  Karolina Corin; James U Bowie
Journal:  EMBO Rep       Date:  2022-02-08       Impact factor: 8.807

6.  Cotranslational folding and assembly of the dimeric Escherichia coli inner membrane protein EmrE.

Authors:  Daphne Mermans; Felix Nicolaus; Klara Fleisch; Gunnar von Heijne
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-22       Impact factor: 12.779

Review 7.  Still rocking in the structural era: a molecular overview of the Small Multidrug Resistance (SMR) transporter family.

Authors:  Olive E Burata; Trevor Justin Yeh; Christian B Macdonald; Randy B Stockbridge
Journal:  J Biol Chem       Date:  2022-09-10       Impact factor: 5.486

8.  Folding and Misfolding of Human Membrane Proteins in Health and Disease: From Single Molecules to Cellular Proteostasis.

Authors:  Justin T Marinko; Hui Huang; Wesley D Penn; John A Capra; Jonathan P Schlebach; Charles R Sanders
Journal:  Chem Rev       Date:  2019-01-04       Impact factor: 60.622

Review 9.  Perturbations of Native Membrane Protein Structure in Alkyl Phosphocholine Detergents: A Critical Assessment of NMR and Biophysical Studies.

Authors:  Christophe Chipot; François Dehez; Jason R Schnell; Nicole Zitzmann; Eva Pebay-Peyroula; Laurent J Catoire; Bruno Miroux; Edmund R S Kunji; Gianluigi Veglia; Timothy A Cross; Paul Schanda
Journal:  Chem Rev       Date:  2018-02-28       Impact factor: 60.622

10.  A Multitask Deep-Learning Method for Predicting Membrane Associations and Secondary Structures of Proteins.

Authors:  Bian Li; Jeffrey Mendenhall; John A Capra; Jens Meiler
Journal:  J Proteome Res       Date:  2021-07-08       Impact factor: 5.370

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