Literature DB >> 28696318

Energetic redistribution in allostery to execute protein function.

Jin Liu1, Ruth Nussinov2,3.   

Abstract

Mesh:

Substances:

Year:  2017        PMID: 28696318      PMCID: PMC5530713          DOI: 10.1073/pnas.1709071114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


× No keyword cloud information.
  22 in total

Review 1.  Electrostatic basis for enzyme catalysis.

Authors:  Arieh Warshel; Pankaz K Sharma; Mitsunori Kato; Yun Xiang; Hanbin Liu; Mats H M Olsson
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

2.  The butterfly effect in cancer: a single base mutation can remodel the cell.

Authors:  Jonathan R Hart; Yaoyang Zhang; Lujian Liao; Lynn Ueno; Lisa Du; Marloes Jonkers; John R Yates; Peter K Vogt
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-12       Impact factor: 11.205

3.  Energetics of enzyme catalysis.

Authors:  A Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  1978-11       Impact factor: 11.205

4.  Allo-network drugs: harnessing allostery in cellular networks.

Authors:  Ruth Nussinov; Chung-Jung Tsai; Peter Csermely
Journal:  Trends Pharmacol Sci       Date:  2011-09-16       Impact factor: 14.819

5.  Allostery without conformational change. A plausible model.

Authors:  A Cooper; D T Dryden
Journal:  Eur Biophys J       Date:  1984       Impact factor: 1.733

6.  Hidden dynamic allostery in a PDZ domain.

Authors:  Chad M Petit; Jun Zhang; Paul J Sapienza; Ernesto J Fuentes; Andrew L Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-14       Impact factor: 11.205

7.  Structure of apo-CAP reveals that large conformational changes are necessary for DNA binding.

Authors:  Hitesh Sharma; Shaoning Yu; Jilie Kong; Jimin Wang; Thomas A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-16       Impact factor: 11.205

8.  Structure of catabolite gene activator protein at 2.9 A resolution suggests binding to left-handed B-DNA.

Authors:  D B McKay; T A Steitz
Journal:  Nature       Date:  1981-04-30       Impact factor: 49.962

9.  The Role of Protein-Ligand Contacts in Allosteric Regulation of the Escherichia coli Catabolite Activator Protein.

Authors:  Philip D Townsend; Thomas L Rodgers; Laura C Glover; Heidi J Korhonen; Shane A Richards; Lucy J Colwell; Ehmke Pohl; Mark R Wilson; David R W Hodgson; Tom C B McLeish; Martin J Cann
Journal:  J Biol Chem       Date:  2015-07-16       Impact factor: 5.157

Review 10.  Biophysical and computational methods to analyze amino acid interaction networks in proteins.

Authors:  Kathleen F O'Rourke; Scott D Gorman; David D Boehr
Journal:  Comput Struct Biotechnol J       Date:  2016-06-22       Impact factor: 7.271

View more
  14 in total

1.  Functional Role of Solvent Entropy and Conformational Entropy of Metal Binding in a Dynamically Driven Allosteric System.

Authors:  Daiana A Capdevila; Katherine A Edmonds; Gregory C Campanello; Hongwei Wu; Giovanni Gonzalez-Gutierrez; David P Giedroc
Journal:  J Am Chem Soc       Date:  2018-07-16       Impact factor: 15.419

2.  Chokepoints in Mechanical Coupling Associated with Allosteric Proteins: The Pyruvate Kinase Example.

Authors:  Lewis E Johnson; Bojana Ginovska; Aron W Fenton; Simone Raugei
Journal:  Biophys J       Date:  2019-04-02       Impact factor: 4.033

Review 3.  Intrinsic dynamics is evolutionarily optimized to enable allosteric behavior.

Authors:  Yan Zhang; Pemra Doruker; Burak Kaynak; She Zhang; James Krieger; Hongchun Li; Ivet Bahar
Journal:  Curr Opin Struct Biol       Date:  2019-11-27       Impact factor: 6.809

4.  Crystal structures of a pentameric ion channel gated by alkaline pH show a widely open pore and identify a cavity for modulation.

Authors:  Haidai Hu; Ákos Nemecz; Catherine Van Renterghem; Zaineb Fourati; Ludovic Sauguet; Pierre-Jean Corringer; Marc Delarue
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-09       Impact factor: 11.205

Review 5.  Autoinhibition in Ras effectors Raf, PI3Kα, and RASSF5: a comprehensive review underscoring the challenges in pharmacological intervention.

Authors:  Ruth Nussinov; Mingzhen Zhang; Chung-Jung Tsai; Tsung-Jen Liao; David Fushman; Hyunbum Jang
Journal:  Biophys Rev       Date:  2018-09-29

6.  Discovery of cryptic allosteric sites using reversed allosteric communication by a combined computational and experimental strategy.

Authors:  Duan Ni; Jiacheng Wei; Xinheng He; Ashfaq Ur Rehman; Xinyi Li; Yuran Qiu; Jun Pu; Shaoyong Lu; Jian Zhang
Journal:  Chem Sci       Date:  2020-11-02       Impact factor: 9.825

7.  Theoretical analysis of inducer and operator binding for cyclic-AMP receptor protein mutants.

Authors:  Tal Einav; Julia Duque; Rob Phillips
Journal:  PLoS One       Date:  2018-09-26       Impact factor: 3.240

Review 8.  PI3K inhibitors: review and new strategies.

Authors:  Mingzhen Zhang; Hyunbum Jang; Ruth Nussinov
Journal:  Chem Sci       Date:  2020-05-19       Impact factor: 9.825

9.  Dissecting a novel allosteric mechanism of cruzain: A computer-aided approach.

Authors:  Lilian Hernández Alvarez; Diego Enry Barreto Gomes; Jorge Enrique Hernández González; Pedro Geraldo Pascutti
Journal:  PLoS One       Date:  2019-01-25       Impact factor: 3.240

Review 10.  Does Ras Activate Raf and PI3K Allosterically?

Authors:  Ruth Nussinov; Chung-Jung Tsai; Hyunbum Jang
Journal:  Front Oncol       Date:  2019-11-15       Impact factor: 6.244

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.