Literature DB >> 21925743

Allo-network drugs: harnessing allostery in cellular networks.

Ruth Nussinov1, Chung-Jung Tsai, Peter Csermely.   

Abstract

Allosteric drugs are increasingly used because they produce fewer side effects. Allosteric signal propagation does not stop at the 'end' of a protein, but may be dynamically transmitted across the cell. We propose here that the concept of allosteric drugs can be broadened to 'allo-network drugs' - whose effects can propagate either within a protein, or across several proteins, to enhance or inhibit specific interactions along a pathway. We posit that current allosteric drugs are a special case of allo-network drugs, and suggest that allo-network drugs can achieve specific, limited changes at the systems level, and in this way can achieve fewer side effects and lower toxicity. Finally, we propose steps and methods to identify allo-network drug targets and sites that outline a new paradigm in systems-based drug design.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21925743      PMCID: PMC7380718          DOI: 10.1016/j.tips.2011.08.004

Source DB:  PubMed          Journal:  Trends Pharmacol Sci        ISSN: 0165-6147            Impact factor:   14.819


  69 in total

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Authors:  Terry Kenakin; Laurence J Miller
Journal:  Pharmacol Rev       Date:  2010-04-14       Impact factor: 25.468

Review 2.  The efficiency of multi-target drugs: the network approach might help drug design.

Authors:  Péter Csermely; Vilmos Agoston; Sándor Pongor
Journal:  Trends Pharmacol Sci       Date:  2005-04       Impact factor: 14.819

3.  Assay principle for modulators of protein-protein interactions and its application to non-ATP-competitive ligands targeting protein kinase A.

Authors:  S Adrian Saldanha; Gregory Kaler; Howard B Cottam; Ruben Abagyan; Susan S Taylor
Journal:  Anal Chem       Date:  2006-12-15       Impact factor: 6.986

4.  A rit GTPase-p38 mitogen-activated protein kinase survival pathway confers resistance to cellular stress.

Authors:  Geng-Xian Shi; Ling Jin; Douglas A Andres
Journal:  Mol Cell Biol       Date:  2011-03-28       Impact factor: 4.272

5.  An allosteric inhibitor of substrate recognition by the SCF(Cdc4) ubiquitin ligase.

Authors:  Stephen Orlicky; Xiaojing Tang; Victor Neduva; Nadine Elowe; Eric D Brown; Frank Sicheri; Mike Tyers
Journal:  Nat Biotechnol       Date:  2010-06-27       Impact factor: 54.908

Review 6.  Disordered proteins and network disorder in network descriptions of protein structure, dynamics and function: hypotheses and a comprehensive review.

Authors:  Peter Csermely; Kuljeet Singh Sandhu; Eszter Hazai; Zsolt Hoksza; Huba J M Kiss; Federico Miozzo; Dániel V Veres; Francesco Piazza; Ruth Nussinov
Journal:  Curr Protein Pept Sci       Date:  2012-02       Impact factor: 3.272

7.  Structure of the human mTOR complex I and its implications for rapamycin inhibition.

Authors:  Calvin K Yip; Kazuyoshi Murata; Thomas Walz; David M Sabatini; Seong A Kang
Journal:  Mol Cell       Date:  2010-06-11       Impact factor: 17.970

8.  Multimeric assembly and biochemical characterization of the Trax-translin endonuclease complex.

Authors:  Yuan Tian; Dhirendra K Simanshu; Manuel Ascano; Ruben Diaz-Avalos; Ah Young Park; Stefan A Juranek; William J Rice; Qian Yin; Carol V Robinson; Thomas Tuschl; Dinshaw J Patel
Journal:  Nat Struct Mol Biol       Date:  2011-05-08       Impact factor: 15.369

9.  Crystal structure of UBA2(ufd)-Ubc9: insights into E1-E2 interactions in Sumo pathways.

Authors:  Jing Wang; Asad M Taherbhoy; Harold W Hunt; Steven N Seyedin; David W Miller; Darcie J Miller; Danny T Huang; Brenda A Schulman
Journal:  PLoS One       Date:  2010-12-30       Impact factor: 3.240

10.  Comparative genomics supports a deep evolutionary origin for the large, four-module transcriptional mediator complex.

Authors:  Henri-Marc Bourbon
Journal:  Nucleic Acids Res       Date:  2008-05-31       Impact factor: 16.971

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  49 in total

1.  Allosteric modulators can restore function in an amino acid neurotransmitter receptor by slightly altering intra-molecular communication pathways.

Authors:  Ruth Nussinov
Journal:  Br J Pharmacol       Date:  2012-04       Impact factor: 8.739

2.  The NRF2-related interactome and regulome contain multifunctional proteins and fine-tuned autoregulatory loops.

Authors:  Diána Papp; Katalin Lenti; Dezső Módos; Dávid Fazekas; Zoltán Dúl; Dénes Türei; László Földvári-Nagy; Ruth Nussinov; Péter Csermely; Tamás Korcsmáros
Journal:  FEBS Lett       Date:  2012-05-26       Impact factor: 4.124

3.  The different ways through which specificity works in orthosteric and allosteric drugs.

Authors:  Ruth Nussinov; Chung-Jung Tsai
Journal:  Curr Pharm Des       Date:  2012       Impact factor: 3.116

4.  An automated approach to network features of protein structure ensembles.

Authors:  Moitrayee Bhattacharyya; Chanda R Bhat; Saraswathi Vishveshwara
Journal:  Protein Sci       Date:  2013-10       Impact factor: 6.725

5.  NAPS update: network analysis of molecular dynamics data and protein-nucleic acid complexes.

Authors:  Broto Chakrabarty; Varun Naganathan; Kanak Garg; Yash Agarwal; Nita Parekh
Journal:  Nucleic Acids Res       Date:  2019-07-02       Impact factor: 16.971

6.  How an Inhibitor Bound to Subunit Interface Alters Triosephosphate Isomerase Dynamics.

Authors:  Zeynep Kurkcuoglu; Doga Findik; Ebru Demet Akten; Pemra Doruker
Journal:  Biophys J       Date:  2015-07-16       Impact factor: 4.033

7.  Allosteric Modulation of Ionotropic Glutamate Receptors: An Outlook on New Therapeutic Approaches To Treat Central Nervous System Disorders.

Authors:  Simone Brogi; Giuseppe Campiani; Margherita Brindisi; Stefania Butini
Journal:  ACS Med Chem Lett       Date:  2019-01-23       Impact factor: 4.345

8.  Energetic redistribution in allostery to execute protein function.

Authors:  Jin Liu; Ruth Nussinov
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-10       Impact factor: 11.205

9.  Computational and experimental analyses reveal the essential roles of interdomain linkers in the biological function of chemotaxis histidine kinase CheA.

Authors:  Xiqing Wang; Chun Wu; Anh Vu; Joan-Emma Shea; Frederick W Dahlquist
Journal:  J Am Chem Soc       Date:  2012-09-21       Impact factor: 15.419

Review 10.  Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review.

Authors:  Peter Csermely; Tamás Korcsmáros; Huba J M Kiss; Gábor London; Ruth Nussinov
Journal:  Pharmacol Ther       Date:  2013-02-04       Impact factor: 12.310

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