Literature DB >> 28674200

The deep, hot biosphere: Twenty-five years of retrospection.

Daniel R Colman1, Saroj Poudel1, Blake W Stamps2, Eric S Boyd3,4, John R Spear5,4.   

Abstract

Twenty-five years ago this month, Thomas Gold published a seminal manuscript suggesting the presence of a "deep, hot biosphere" in the Earth's crust. Since this publication, a considerable amount of attention has been given to the study of deep biospheres, their role in geochemical cycles, and their potential to inform on the origin of life and its potential outside of Earth. Overwhelming evidence now supports the presence of a deep biosphere ubiquitously distributed on Earth in both terrestrial and marine settings. Furthermore, it has become apparent that much of this life is dependent on lithogenically sourced high-energy compounds to sustain productivity. A vast diversity of uncultivated microorganisms has been detected in subsurface environments, and we show that H2, CH4, and CO feature prominently in many of their predicted metabolisms. Despite 25 years of intense study, key questions remain on life in the deep subsurface, including whether it is endemic and the extent of its involvement in the anaerobic formation and degradation of hydrocarbons. Emergent data from cultivation and next-generation sequencing approaches continue to provide promising new hints to answer these questions. As Gold suggested, and as has become increasingly evident, to better understand the subsurface is critical to further understanding the Earth, life, the evolution of life, and the potential for life elsewhere. To this end, we suggest the need to develop a robust network of interdisciplinary scientists and accessible field sites for long-term monitoring of the Earth's subsurface in the form of a deep subsurface microbiome initiative.

Entities:  

Keywords:  biogeochemistry; geobiology; hydrogen; subsurface; thermophiles

Mesh:

Substances:

Year:  2017        PMID: 28674200      PMCID: PMC5502609          DOI: 10.1073/pnas.1701266114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  68 in total

1.  [FeFe]-hydrogenase in Yellowstone National Park: evidence for dispersal limitation and phylogenetic niche conservatism.

Authors:  Eric S Boyd; Trinity L Hamilton; John R Spear; Matthew Lavin; John W Peters
Journal:  ISME J       Date:  2010-06-10       Impact factor: 10.302

2.  Microbial and functional diversity of a subterrestrial high pH groundwater associated to serpentinization.

Authors:  Igor Tiago; António Veríssimo
Journal:  Environ Microbiol       Date:  2012-11-29       Impact factor: 5.491

3.  Extending the sub-sea-floor biosphere.

Authors:  Erwan G Roussel; Marie-Anne Cambon Bonavita; Joël Querellou; Barry A Cragg; Gordon Webster; Daniel Prieur; R John Parkes
Journal:  Science       Date:  2008-05-23       Impact factor: 47.728

Review 4.  Uncultivated thermophiles: current status and spotlight on 'Aigarchaeota'.

Authors:  Brian P Hedlund; Senthil K Murugapiran; Timothy W Alba; Asaf Levy; Jeremy A Dodsworth; Gisele B Goertz; Natalia Ivanova; Tanja Woyke
Journal:  Curr Opin Microbiol       Date:  2015-06-23       Impact factor: 7.934

5.  Serpentinization and its implications for life on the early Earth and Mars.

Authors:  Mitch Schulte; David Blake; Tori Hoehler; Thomas McCollom
Journal:  Astrobiology       Date:  2006-04       Impact factor: 4.335

6.  The contribution of the Precambrian continental lithosphere to global H2 production.

Authors:  Barbara Sherwood Lollar; T C Onstott; G Lacrampe-Couloume; C J Ballentine
Journal:  Nature       Date:  2014-12-18       Impact factor: 49.962

7.  Selenate and Nitrate Bioreductions Using Methane as the Electron Donor in a Membrane Biofilm Reactor.

Authors:  Chun-Yu Lai; Li-Lian Wen; Ling-Dong Shi; Kan-Kan Zhao; Yi-Qi Wang; Xiaoe Yang; Bruce E Rittmann; Chen Zhou; Youneng Tang; Ping Zheng; He-Ping Zhao
Journal:  Environ Sci Technol       Date:  2016-09-01       Impact factor: 9.028

8.  Distribution and activity of bacteria in deep granitic groundwaters of southeastern sweden.

Authors:  K Pedersen; S Ekendahl
Journal:  Microb Ecol       Date:  1990-12       Impact factor: 4.552

9.  Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics.

Authors:  Paul N Evans; Donovan H Parks; Grayson L Chadwick; Steven J Robbins; Victoria J Orphan; Suzanne D Golding; Gene W Tyson
Journal:  Science       Date:  2015-10-23       Impact factor: 47.728

10.  Comparisons of the composition and biogeographic distribution of the bacterial communities occupying South African thermal springs with those inhabiting deep subsurface fracture water.

Authors:  Cara Magnabosco; Memory Tekere; Maggie C Y Lau; Borja Linage; Olukayode Kuloyo; Mariana Erasmus; Errol Cason; Esta van Heerden; Gaetan Borgonie; Thomas L Kieft; Jana Olivier; Tullis C Onstott
Journal:  Front Microbiol       Date:  2014-12-17       Impact factor: 5.640

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  19 in total

1.  Hidden intermediates in Mango III RNA aptamer folding revealed by pressure perturbation.

Authors:  Balasubramanian Harish; Jinqiu Wang; Eric J Hayden; Bastian Grabe; Wolf Hiller; Roland Winter; Catherine A Royer
Journal:  Biophys J       Date:  2021-12-28       Impact factor: 4.033

2.  Carbon Geochemistry of the Active Serpentinization Site at the Wadi Tayin Massif: Insights From the ICDP Oman Drilling Project: Phase II.

Authors:  Lotta Ternieten; Gretchen L Früh-Green; Stefano M Bernasconi
Journal:  J Geophys Res Solid Earth       Date:  2021-12-17       Impact factor: 4.390

Review 3.  Advances in Defining Ecosystem Functions of the Terrestrial Subsurface Biosphere.

Authors:  D'Arcy R Meyer-Dombard; Judy Malas
Journal:  Front Microbiol       Date:  2022-06-02       Impact factor: 6.064

4.  Structural evolution of the ancient enzyme, dissimilatory sulfite reductase.

Authors:  Daniel R Colman; Gilles Labesse; Gurla V T Swapna; Johanna Stefanakis; Gaetano T Montelione; Eric S Boyd; Catherine A Royer
Journal:  Proteins       Date:  2022-02-18

5.  Characterization of the Microbiome at the World's Largest Potable Water Reuse Facility.

Authors:  Blake W Stamps; Menu B Leddy; Megan H Plumlee; Nur A Hasan; Rita R Colwell; John R Spear
Journal:  Front Microbiol       Date:  2018-10-26       Impact factor: 5.640

6.  Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution.

Authors:  Liang Shen; Yongqin Liu; Michelle A Allen; Baiqing Xu; Ninglian Wang; Timothy J Williams; Feng Wang; Yuguang Zhou; Qing Liu; Ricardo Cavicchioli
Journal:  Microbiome       Date:  2021-06-12       Impact factor: 14.650

7.  Comet Pond II: Synergistic Intersection of Concentrated Extraterrestrial Materials and Planetary Environments to Form Procreative Darwinian Ponds.

Authors:  Benton C Clark; Vera M Kolb
Journal:  Life (Basel)       Date:  2018-05-11

Review 8.  Microorganisms and Their Metabolic Capabilities in the Context of the Biogeochemical Nitrogen Cycle at Extreme Environments.

Authors:  Rosa María Martínez-Espinosa
Journal:  Int J Mol Sci       Date:  2020-06-13       Impact factor: 5.923

Review 9.  Low Energy Subsurface Environments as Extraterrestrial Analogs.

Authors:  Rose M Jones; Jacqueline M Goordial; Beth N Orcutt
Journal:  Front Microbiol       Date:  2018-07-18       Impact factor: 5.640

10.  Viable cyanobacteria in the deep continental subsurface.

Authors:  Fernando Puente-Sánchez; Alejandro Arce-Rodríguez; Monike Oggerin; Miriam García-Villadangos; Mercedes Moreno-Paz; Yolanda Blanco; Nuria Rodríguez; Laurence Bird; Sara A Lincoln; Fernando Tornos; Olga Prieto-Ballesteros; Katherine H Freeman; Dietmar H Pieper; Kenneth N Timmis; Ricardo Amils; Víctor Parro
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-01       Impact factor: 11.205

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