Literature DB >> 28669983

Exploiting induced and natural epigenetic variation for crop improvement.

Nathan M Springer1, Robert J Schmitz2.   

Abstract

Plant breeding has traditionally relied on combining the genetic diversity present within a species to develop combinations of alleles that provide desired traits. Epigenetic diversity may provide additional sources of variation within a species that could be captured or created for crop improvement. It will be important to understand the sources of epigenetic variation and the stability of newly formed epigenetic variants over generations to fully use the potential of epigenetic variation to improve crops. The development and application of methods for widespread epigenome profiling and engineering may generate new avenues for using the full potential of epigenetics in crop improvement.

Mesh：

Year:  2017        PMID： 28669983     DOI： 10.1038/nrg.2017.45

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN： 1471-0056            Impact factor:   53.242


  151 in total

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Authors:  Shohei Takuno; Brandon S Gaut
Journal:  Mol Biol Evol       Date:  2011-08-02       Impact factor: 16.240

Review 2.  Histone variants in plant transcriptional regulation.

Authors:  Danhua Jiang; Frédéric Berger
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2016-07-10       Impact factor: 4.490

3.  Transgenerational epigenetic instability is a source of novel methylation variants.

Authors:  Robert J Schmitz; Matthew D Schultz; Mathew G Lewsey; Ronan C O'Malley; Mark A Urich; Ondrej Libiger; Nicholas J Schork; Joseph R Ecker
Journal:  Science       Date:  2011-09-15       Impact factor: 47.728

4.  Epigenetic and genetic influences on DNA methylation variation in maize populations.

Authors:  Steven R Eichten; Roman Briskine; Jawon Song; Qing Li; Ruth Swanson-Wagner; Peter J Hermanson; Amanda J Waters; Evan Starr; Patrick T West; Peter Tiffin; Chad L Myers; Matthew W Vaughn; Nathan M Springer
Journal:  Plant Cell       Date:  2013-08-06       Impact factor: 11.277

5.  Mobile small RNAs regulate genome-wide DNA methylation.

Authors:  Mathew G Lewsey; Thomas J Hardcastle; Charles W Melnyk; Attila Molnar; Adrián Valli; Mark A Urich; Joseph R Nery; David C Baulcombe; Joseph R Ecker
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-19       Impact factor: 11.205

6.  Apple skin patterning is associated with differential expression of MYB10.

Authors:  Adriana Telias; Kui Lin-Wang; David E Stevenson; Janine M Cooney; Roger P Hellens; Andrew C Allan; Emily E Hoover; James M Bradeen
Journal:  BMC Plant Biol       Date:  2011-05-20       Impact factor: 4.215

7.  Methylation-sensitive expression of a DNA demethylase gene serves as an epigenetic rheostat.

Authors:  Ben P Williams; Daniela Pignatta; Steven Henikoff; Mary Gehring
Journal:  PLoS Genet       Date:  2015-03-31       Impact factor: 5.917

8.  Minimal evidence for consistent changes in maize DNA methylation patterns following environmental stress.

Authors:  Steven R Eichten; Nathan M Springer
Journal:  Front Plant Sci       Date:  2015-05-06       Impact factor: 5.753

9.  Epigenomic consequences of immortalized plant cell suspension culture.

Authors:  Milos Tanurdzic; Matthew W Vaughn; Hongmei Jiang; Tae-Jin Lee; R Keith Slotkin; Bryon Sosinski; William F Thompson; R W Doerge; Robert A Martienssen
Journal:  PLoS Biol       Date:  2008-12-09       Impact factor: 8.029

10.  Full-length autonomous transposable elements are preferentially targeted by expression-dependent forms of RNA-directed DNA methylation.

Authors:  Kaushik Panda; Lexiang Ji; Drexel A Neumann; Josquin Daron; Robert J Schmitz; R Keith Slotkin
Journal:  Genome Biol       Date:  2016-08-09       Impact factor: 13.583
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  56 in total

Review 1.  Tissue culture-induced DNA methylation in crop plants: a review.

Authors:  Amrita Ghosh; Abir U Igamberdiev; Samir C Debnath
Journal:  Mol Biol Rep       Date:  2021-01-04       Impact factor: 2.316

Review 2.  Combinatorial Interactions of Biotic and Abiotic Stresses in Plants and Their Molecular Mechanisms: Systems Biology Approach.

Authors:  Arun Kumar Dangi; Babita Sharma; Ishu Khangwal; Pratyoosh Shukla
Journal:  Mol Biotechnol       Date:  2018-08       Impact factor: 2.695

3.  Heritable Epigenomic Changes to the Maize Methylome Resulting from Tissue Culture.

Authors:  Zhaoxue Han; Peter A Crisp; Scott Stelpflug; Shawn M Kaeppler; Qing Li; Nathan M Springer
Journal:  Genetics       Date:  2018-05-30       Impact factor: 4.562

Review 4.  The importance of genomic variation for biodiversity, ecosystems and people.

Authors:  Madlen Stange; Rowan D H Barrett; Andrew P Hendry
Journal:  Nat Rev Genet       Date:  2020-10-16       Impact factor: 53.242

5.  Assessment of natural DNA methylation variation and its association with economically important traits in dolichos bean (Lablab purpureus L. Var. Lignosus) using AMP-PCR assay.

Authors:  H Ajaykumar; S Ramesh; N C Sunitha; C Anilkumar
Journal:  J Appl Genet       Date:  2021-07-10       Impact factor: 3.240

Review 6.  Epigenetics and epigenomics: underlying mechanisms, relevance, and implications in crop improvement.

Authors:  Gaurav Agarwal; Himabindu Kudapa; Abirami Ramalingam; Divya Choudhary; Pallavi Sinha; Vanika Garg; Vikas K Singh; Gunvant B Patil; Manish K Pandey; Henry T Nguyen; Baozhu Guo; Ramanjulu Sunkar; Chad E Niederhuth; Rajeev K Varshney
Journal:  Funct Integr Genomics       Date:  2020-10-21       Impact factor: 3.410

7.  Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes.

Authors:  Peter A Crisp; Alexandre P Marand; Jaclyn M Noshay; Peng Zhou; Zefu Lu; Robert J Schmitz; Nathan M Springer
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-02       Impact factor: 11.205

8.  Epigenetic diversity of Saccharum spp. accessions assessed by methylation-sensitive amplification polymorphism (MSAP).

Authors:  Alessandra Alves Martins; Marcel F da Silva; Luciana Rossini Pinto
Journal:  3 Biotech       Date:  2020-05-24       Impact factor: 2.406

Review 9.  Epigenetic perspectives on the evolution and domestication of polyploid plant and crops.

Authors:  Mingquan Ding; Z Jeffrey Chen
Journal:  Curr Opin Plant Biol       Date:  2018-03-07       Impact factor: 7.834

10.  Genome-wide locus-specific DNA methylation repatterning may facilitate rapid evolution of mercury resistance in rice.

Authors:  Weixuan Cong; Ning Li; Jinbin Wang; Ying Kang; Yiling Miao; Chunming Xu; Ziqi Wang; Tongtong Liu; Lei Gong; Bao Liu; Xiufang Ou
Journal:  Genes Genomics       Date:  2021-11-30       Impact factor: 1.839
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