Literature DB >> 33089419

Epigenetics and epigenomics: underlying mechanisms, relevance, and implications in crop improvement.

Gaurav Agarwal1,2, Himabindu Kudapa1, Abirami Ramalingam3, Divya Choudhary2, Pallavi Sinha1, Vanika Garg1, Vikas K Singh4, Gunvant B Patil5, Manish K Pandey1, Henry T Nguyen6, Baozhu Guo2,7, Ramanjulu Sunkar8, Chad E Niederhuth9, Rajeev K Varshney10,11.   

Abstract

Epigenetics is defined as changes in gene expression that are not associated with changes in DNA sequence but due to the result of methylation of DNA and post-translational modifications to the histones. These epigenetic modifications are known to regulate gene expression by bringing changes in the chromatin state, which underlies plant development and shapes phenotypic plasticity in responses to the environment and internal cues. This review articulates the role of histone modifications and DNA methylation in modulating biotic and abiotic stresses, as well as crop improvement. It also highlights the possibility of engineering epigenomes and epigenome-based predictive models for improving agronomic traits.

Entities:  

Keywords:  DNA methylation; EpiRILs; Epigenetic inheritance; Epigenome engineering; Histone modifications

Year:  2020        PMID: 33089419     DOI: 10.1007/s10142-020-00756-7

Source DB:  PubMed          Journal:  Funct Integr Genomics        ISSN: 1438-793X            Impact factor:   3.410


  188 in total

1.  A test for a metastable epigenetic component of heterosis using haploid induction in maize.

Authors:  D L Auger; T S Ream; J A Birchler
Journal:  Theor Appl Genet       Date:  2003-11-21       Impact factor: 5.699

2.  Repeat associated small RNAs vary among parents and following hybridization in maize.

Authors:  Wesley T Barber; Wei Zhang; Hlaing Win; Kranthi K Varala; Jane E Dorweiler; Matthew E Hudson; Stephen P Moose
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-11       Impact factor: 11.205

3.  Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation.

Authors:  Fernanda Agius; Avnish Kapoor; Jian-Kang Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-24       Impact factor: 11.205

4.  ATX-1, an Arabidopsis homolog of trithorax, activates flower homeotic genes.

Authors:  Raul Alvarez-Venegas; Stephane Pien; Monther Sadder; Xiaohong Witmer; Ueli Grossniklaus; Zoya Avramova
Journal:  Curr Biol       Date:  2003-04-15       Impact factor: 10.834

Review 5.  Imprinting in plants as a mechanism to generate seed phenotypic diversity.

Authors:  Fang Bai; A M Settles
Journal:  Front Plant Sci       Date:  2015-01-27       Impact factor: 5.753

6.  Comparison of the Relative Potential for Epigenetic and Genetic Variation To Contribute to Trait Stability.

Authors:  Emma S T Aller; Lea M Jagd; Daniel J Kliebenstein; Meike Burow
Journal:  G3 (Bethesda)       Date:  2018-05-04       Impact factor: 3.154

Review 7.  The role of plant epigenetics in biotic interactions.

Authors:  Conchita Alonso; Daniela Ramos-Cruz; Claude Becker
Journal:  New Phytol       Date:  2018-08-29       Impact factor: 10.151

Review 8.  The molecular hallmarks of epigenetic control.

Authors:  C David Allis; Thomas Jenuwein
Journal:  Nat Rev Genet       Date:  2016-06-27       Impact factor: 53.242

9.  The Phaseolus vulgaris PvTRX1h gene regulates plant hormone biosynthesis in embryogenic callus from common bean.

Authors:  Aarón Barraza; José L Cabrera-Ponce; Roberto Gamboa-Becerra; Francisco Luna-Martínez; Robert Winkler; Raúl Álvarez-Venegas
Journal:  Front Plant Sci       Date:  2015-07-28       Impact factor: 5.753

10.  Histone Deacetylase HDA9 With ABI4 Contributes to Abscisic Acid Homeostasis in Drought Stress Response.

Authors:  Dongwon Baek; Gilok Shin; Min Chul Kim; Mingzhe Shen; Sang Yeol Lee; Dae-Jin Yun
Journal:  Front Plant Sci       Date:  2020-02-25       Impact factor: 5.753

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  4 in total

1.  Physiological, epigenetic, and proteomic responses in Pfaffia glomerata growth in vitro under salt stress and 5-azacytidine.

Authors:  Evandro Alexandre Fortini; Diego Silva Batista; Sérgio Heitor Sousa Felipe; Tatiane Dulcineia Silva; Ludmila Nayara Freitas Correia; Letícia Monteiro Farias; Daniele Vidal Faria; Vitor Batista Pinto; Claudete Santa-Catarina; Vanildo Silveira; Clelia De-la-Peña; Eduardo Castillo-Castro; Wagner Campos Otoni
Journal:  Protoplasma       Date:  2022-07-05       Impact factor: 3.356

2.  Herbicide stress-induced DNA methylation changes in two Zea mays inbred lines differing in Roundup® resistance.

Authors:  Agata Tyczewska; Joanna Gracz-Bernaciak; Jakub Szymkowiak; Tomasz Twardowski
Journal:  J Appl Genet       Date:  2021-01-29       Impact factor: 3.240

Review 3.  Epigenetics and its role in effecting agronomical traits.

Authors:  Chainika Gupta; Romesh K Salgotra
Journal:  Front Plant Sci       Date:  2022-08-15       Impact factor: 6.627

Review 4.  Genetic, Epigenetic, Genomic and Microbial Approaches to Enhance Salt Tolerance of Plants: A Comprehensive Review.

Authors:  Gargi Prasad Saradadevi; Debajit Das; Satendra K Mangrauthia; Sridev Mohapatra; Channakeshavaiah Chikkaputtaiah; Manish Roorkiwal; Manish Solanki; Raman Meenakshi Sundaram; Neeraja N Chirravuri; Akshay S Sakhare; Suneetha Kota; Rajeev K Varshney; Gireesha Mohannath
Journal:  Biology (Basel)       Date:  2021-12-01
  4 in total

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