Literature DB >> 28668720

Inhibition of CRISPR-Cas systems by mobile genetic elements.

Erik J Sontheimer1, Alan R Davidson2.   

Abstract

Clustered, regularly interspaced, short, palindromic repeats (CRISPR) loci, together with their CRISPR-associated (Cas) proteins, provide bacteria and archaea with adaptive immunity against invasion by bacteriophages, plasmids, and other mobile genetic elements. These host defenses impart selective pressure on phages and mobile elements to evolve countermeasures against CRISPR immunity. As a consequence of this pressure, phages and mobile elements have evolved 'anti-CRISPR' proteins that function as direct inhibitors of diverse CRISPR-Cas effector complexes. Some of these CRISPR-Cas complexes can be deployed as genome engineering platforms, and anti-CRISPRs could therefore be useful in exerting spatial, temporal, or conditional control over genome editing and related applications. Here we describe the discovery of anti-CRISPRs, the range of CRISPR-Cas systems that they inhibit, their mechanisms of action, and their potential utility in biotechnology.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 28668720      PMCID: PMC5737815          DOI: 10.1016/j.mib.2017.06.003

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  50 in total

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Review 2.  RNA-based recognition and targeting: sowing the seeds of specificity.

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3.  Diversity and evolution of class 2 CRISPR-Cas systems.

Authors:  Sergey Shmakov; Aaron Smargon; David Scott; David Cox; Neena Pyzocha; Winston Yan; Omar O Abudayyeh; Jonathan S Gootenberg; Kira S Makarova; Yuri I Wolf; Konstantin Severinov; Feng Zhang; Eugene V Koonin
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4.  CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA.

Authors:  Luciano A Marraffini; Erik J Sontheimer
Journal:  Science       Date:  2008-12-19       Impact factor: 47.728

5.  Phage response to CRISPR-encoded resistance in Streptococcus thermophilus.

Authors:  Hélène Deveau; Rodolphe Barrangou; Josiane E Garneau; Jessica Labonté; Christophe Fremaux; Patrick Boyaval; Dennis A Romero; Philippe Horvath; Sylvain Moineau
Journal:  J Bacteriol       Date:  2007-12-07       Impact factor: 3.490

Review 6.  An updated evolutionary classification of CRISPR-Cas systems.

Authors:  Kira S Makarova; Yuri I Wolf; Omer S Alkhnbashi; Fabrizio Costa; Shiraz A Shah; Sita J Saunders; Rodolphe Barrangou; Stan J J Brouns; Emmanuelle Charpentier; Daniel H Haft; Philippe Horvath; Sylvain Moineau; Francisco J M Mojica; Rebecca M Terns; Michael P Terns; Malcolm F White; Alexander F Yakunin; Roger A Garrett; John van der Oost; Rolf Backofen; Eugene V Koonin
Journal:  Nat Rev Microbiol       Date:  2015-09-28       Impact factor: 60.633

7.  Efficient genome engineering in human pluripotent stem cells using Cas9 from Neisseria meningitidis.

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8.  CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III.

Authors:  Elitza Deltcheva; Krzysztof Chylinski; Cynthia M Sharma; Karine Gonzales; Yanjie Chao; Zaid A Pirzada; Maria R Eckert; Jörg Vogel; Emmanuelle Charpentier
Journal:  Nature       Date:  2011-03-31       Impact factor: 49.962

9.  Functional annotation of native enhancers with a Cas9-histone demethylase fusion.

Authors:  Nicola A Kearns; Hannah Pham; Barbara Tabak; Ryan M Genga; Noah J Silverstein; Manuel Garber; René Maehr
Journal:  Nat Methods       Date:  2015-03-16       Impact factor: 28.547

10.  Cas9 function and host genome sampling in Type II-A CRISPR-Cas adaptation.

Authors:  Yunzhou Wei; Rebecca M Terns; Michael P Terns
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  14 in total

Review 1.  Structure-based functional mechanisms and biotechnology applications of anti-CRISPR proteins.

Authors:  Ning Jia; Dinshaw J Patel
Journal:  Nat Rev Mol Cell Biol       Date:  2021-06-04       Impact factor: 94.444

Review 2.  Type II-C CRISPR-Cas9 Biology, Mechanism, and Application.

Authors:  Aamir Mir; Alireza Edraki; Jooyoung Lee; Erik J Sontheimer
Journal:  ACS Chem Biol       Date:  2017-12-20       Impact factor: 5.100

Review 3.  The enigmatic archaeal virosphere.

Authors:  David Prangishvili; Dennis H Bamford; Patrick Forterre; Jaime Iranzo; Eugene V Koonin; Mart Krupovic
Journal:  Nat Rev Microbiol       Date:  2017-11-10       Impact factor: 60.633

4.  CRISPR RNA and anti-CRISPR protein binding to the Xanthomonas albilineans Csy1-Csy2 heterodimer in the type I-F CRISPR-Cas system.

Authors:  Suji Hong; Donghyun Ka; Seo Jeong Yoon; Nayoung Suh; Migyeong Jeong; Jeong-Yong Suh; Euiyoung Bae
Journal:  J Biol Chem       Date:  2018-01-18       Impact factor: 5.157

5.  Crystal structure of an anti-CRISPR protein, AcrIIA1.

Authors:  Donghyun Ka; So Young An; Jeong-Yong Suh; Euiyoung Bae
Journal:  Nucleic Acids Res       Date:  2018-01-09       Impact factor: 16.971

6.  Potent Cas9 Inhibition in Bacterial and Human Cells by AcrIIC4 and AcrIIC5 Anti-CRISPR Proteins.

Authors:  Jooyoung Lee; Aamir Mir; Alireza Edraki; Bianca Garcia; Nadia Amrani; Hannah E Lou; Ildar Gainetdinov; April Pawluk; Raed Ibraheim; Xin D Gao; Pengpeng Liu; Alan R Davidson; Karen L Maxwell; Erik J Sontheimer
Journal:  mBio       Date:  2018-12-04       Impact factor: 7.867

7.  NmeCas9 is an intrinsically high-fidelity genome-editing platform.

Authors:  Nadia Amrani; Xin D Gao; Pengpeng Liu; Alireza Edraki; Aamir Mir; Raed Ibraheim; Ankit Gupta; Kanae E Sasaki; Tong Wu; Paul D Donohoue; Alexander H Settle; Alexandra M Lied; Kyle McGovern; Chris K Fuller; Peter Cameron; Thomas G Fazzio; Lihua Julie Zhu; Scot A Wolfe; Erik J Sontheimer
Journal:  Genome Biol       Date:  2018-12-05       Impact factor: 13.583

8.  Temperature-Responsive Competitive Inhibition of CRISPR-Cas9.

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Journal:  Mol Cell       Date:  2018-12-27       Impact factor: 17.970

Review 9.  Structural insights into the inactivation of CRISPR-Cas systems by diverse anti-CRISPR proteins.

Authors:  Yuwei Zhu; Fan Zhang; Zhiwei Huang
Journal:  BMC Biol       Date:  2018-03-19       Impact factor: 7.431

Review 10.  CRISPR-Cas9/Cas12a biotechnology and application in bacteria.

Authors:  Ruilian Yao; Di Liu; Xiao Jia; Yuan Zheng; Wei Liu; Yi Xiao
Journal:  Synth Syst Biotechnol       Date:  2018-10-03
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