Literature DB >> 28668509

Quantitatively Understanding Plant Signaling: Novel Theoretical-Experimental Approaches.

Sophia L Samodelov1, Matias D Zurbriggen2.   

Abstract

With the need to respond to and integrate a multitude of external and internal stimuli, plant signaling is highly complex, exhibiting signaling component redundancy and high interconnectedness between individual pathways. We review here novel theoretical-experimental approaches in manipulating plant signaling towards the goal of a comprehensive understanding and targeted quantitative control of plant processes. We highlight approaches taken in the field of synthetic biology used in other systems and discuss their applicability in plants. Finally, we introduce existing tools for the quantitative analysis and monitoring of plant signaling and the integration of experimentally obtained quantitative data into mathematical models. Incorporating principles of synthetic biology into plant sciences more widely will lead this field forward in both fundamental and applied research.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Keywords:  mathematical modeling; orthogonal systems; plant synthetic biology; quantitative studies; signaling networks; synthetic signaling

Mesh:

Year:  2017        PMID: 28668509     DOI: 10.1016/j.tplants.2017.05.006

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  7 in total

Review 1.  Synthetic Switches and Regulatory Circuits in Plants.

Authors:  Jennifer Andres; Tim Blomeier; Matias D Zurbriggen
Journal:  Plant Physiol       Date:  2019-01-28       Impact factor: 8.340

2.  Genetically Encoded Biosensors for the Quantitative Analysis of Auxin Dynamics in Plant Cells.

Authors:  Jennifer Andres; Matias D Zurbriggen
Journal:  Methods Mol Biol       Date:  2022

Review 3.  Future Challenges in Plant Systems Biology.

Authors:  Mikaël Lucas
Journal:  Methods Mol Biol       Date:  2022

Review 4.  The Red Edge: Bilin-Binding Photoreceptors as Optogenetic Tools and Fluorescence Reporters.

Authors:  Kun Tang; Hannes M Beyer; Matias D Zurbriggen; Wolfgang Gärtner
Journal:  Chem Rev       Date:  2021-10-20       Impact factor: 72.087

Review 5.  Recent developments and emerging trends of mass spectrometric methods in plant hormone analysis: a review.

Authors:  Liyuan Wang; Yilin Zou; Han Yeong Kaw; Gang Wang; Huaze Sun; Long Cai; Chengyu Li; Long-Yue Meng; Donghao Li
Journal:  Plant Methods       Date:  2020-04-16       Impact factor: 4.993

6.  Phospho-mutant activity assays provide evidence for alternative phospho-regulation pathways of the transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR.

Authors:  Regina Gratz; Tzvetina Brumbarova; Rumen Ivanov; Ksenia Trofimov; Laura Tünnermann; Rocio Ochoa-Fernandez; Tim Blomeier; Johannes Meiser; Stefanie Weidtkamp-Peters; Matias D Zurbriggen; Petra Bauer
Journal:  New Phytol       Date:  2019-10-13       Impact factor: 10.151

7.  Q&A: How do gene regulatory networks control environmental responses in plants?

Authors:  Ying Sun; José R Dinneny
Journal:  BMC Biol       Date:  2018-04-11       Impact factor: 7.431

  7 in total

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