Literature DB >> 28653016

Gland segmentation in prostate histopathological images.

Malay Singh1,2, Emarene Mationg Kalaw2, Danilo Medina Giron3, Kian-Tai Chong4, Chew Lim Tan1, Hwee Kuan Lee1,2,5.   

Abstract

Glandular structural features are important for the tumor pathologist in the assessment of cancer malignancy of prostate tissue slides. The varying shapes and sizes of glands combined with the tedious manual observation task can result in inaccurate assessment. There are also discrepancies and low-level agreement among pathologists, especially in cases of Gleason pattern 3 and pattern 4 prostate adenocarcinoma. An automated gland segmentation system can highlight various glandular shapes and structures for further analysis by the pathologist. These objective highlighted patterns can help reduce the assessment variability. We propose an automated gland segmentation system. Forty-three hematoxylin and eosin-stained images were acquired from prostate cancer tissue slides and were manually annotated for gland, lumen, periacinar retraction clefting, and stroma regions. Our automated gland segmentation system was trained using these manual annotations. It identifies these regions using a combination of pixel and object-level classifiers by incorporating local and spatial information for consolidating pixel-level classification results into object-level segmentation. Experimental results show that our method outperforms various texture and gland structure-based gland segmentation algorithms in the literature. Our method has good performance and can be a promising tool to help decrease interobserver variability among pathologists.

Entities:  

Keywords:  AdaBoost; digital pathology; gland segmentation; prostate cancer; support vector machine

Year:  2017        PMID: 28653016      PMCID: PMC5479152          DOI: 10.1117/1.JMI.4.2.027501

Source DB:  PubMed          Journal:  J Med Imaging (Bellingham)        ISSN: 2329-4302


  28 in total

1.  Interobserver reproducibility of Gleason grading of prostatic carcinoma: general pathologist.

Authors:  W C Allsbrook; K A Mangold; M H Johnson; R B Lane; C G Lane; J I Epstein
Journal:  Hum Pathol       Date:  2001-01       Impact factor: 3.466

2.  Automatic segmentation of colon glands using object-graphs.

Authors:  Cigdem Gunduz-Demir; Melih Kandemir; Akif Burak Tosun; Cenk Sokmensuer
Journal:  Med Image Anal       Date:  2009-09-19       Impact factor: 8.545

3.  Prostate cancer grading: use of graph cut and spatial arrangement of nuclei.

Authors:  Kien Nguyen; Anindya Sarkar; Anil K Jain
Journal:  IEEE Trans Med Imaging       Date:  2014-07-10       Impact factor: 10.048

4.  Automatic classification of white regions in liver biopsies by supervised machine learning.

Authors:  Scott Vanderbeck; Joseph Bockhorst; Richard Komorowski; David E Kleiner; Samer Gawrieh
Journal:  Hum Pathol       Date:  2013-11-26       Impact factor: 3.466

5.  Outcomes for men with clinically nonmetastatic prostate carcinoma managed with radical prostactectomy, external beam radiotherapy, or expectant management: a retrospective analysis.

Authors:  M J Barry; P C Albertsen; M A Bagshaw; M L Blute; R Cox; R G Middleton; D F Gleason; H Zincke; E J Bergstralh; S J Jacobsen
Journal:  Cancer       Date:  2001-06-15       Impact factor: 6.860

6.  Omega: A General Formulation of the Rand Index of Cluster Recovery Suitable for Non-disjoint Solutions.

Authors:  L M Collins; C W Dent
Journal:  Multivariate Behav Res       Date:  1988-04-01       Impact factor: 5.923

7.  Prognostic value of the Gleason score in prostate cancer.

Authors:  L Egevad; T Granfors; L Karlberg; A Bergh; P Stattin
Journal:  BJU Int       Date:  2002-04       Impact factor: 5.588

8.  Phase 3 study of adjuvant radiotherapy versus wait and see in pT3 prostate cancer: impact of pathology review on analysis.

Authors:  Dirk Bottke; Reinhard Golz; Stephan Störkel; Axel Hinke; Alessandra Siegmann; Lothar Hertle; Kurt Miller; Wolfgang Hinkelbein; Thomas Wiegel
Journal:  Eur Urol       Date:  2013-03-17       Impact factor: 20.096

9.  An image analysis approach for automatic malignancy determination of prostate pathological images.

Authors:  Reza Farjam; Hamid Soltanian-Zadeh; Kourosh Jafari-Khouzani; Reza A Zoroofi
Journal:  Cytometry B Clin Cytom       Date:  2007-07       Impact factor: 3.058

Review 10.  Image analysis and machine learning in digital pathology: Challenges and opportunities.

Authors:  Anant Madabhushi; George Lee
Journal:  Med Image Anal       Date:  2016-07-04       Impact factor: 8.545

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  4 in total

Review 1.  Artificial intelligence at the intersection of pathology and radiology in prostate cancer.

Authors:  Stephnie A Harmon; Sena Tuncer; Thomas Sanford; Peter L Choyke; Barış Türkbey
Journal:  Diagn Interv Radiol       Date:  2019-05       Impact factor: 2.630

2.  Prostate Cancer Risk Stratification via Nondestructive 3D Pathology with Deep Learning-Assisted Gland Analysis.

Authors:  Weisi Xie; Nicholas P Reder; Can Koyuncu; Patrick Leo; Sarah Hawley; Hongyi Huang; Chenyi Mao; Nadia Postupna; Soyoung Kang; Robert Serafin; Gan Gao; Qinghua Han; Kevin W Bishop; Lindsey A Barner; Pingfu Fu; Jonathan L Wright; C Dirk Keene; Joshua C Vaughan; Andrew Janowczyk; Adam K Glaser; Anant Madabhushi; Lawrence D True; Jonathan T C Liu
Journal:  Cancer Res       Date:  2021-12-01       Impact factor: 13.312

3.  Epithelium segmentation using deep learning in H&E-stained prostate specimens with immunohistochemistry as reference standard.

Authors:  Wouter Bulten; Péter Bándi; Jeffrey Hoven; Rob van de Loo; Johannes Lotz; Nick Weiss; Jeroen van der Laak; Bram van Ginneken; Christina Hulsbergen-van de Kaa; Geert Litjens
Journal:  Sci Rep       Date:  2019-01-29       Impact factor: 4.379

Review 4.  Role of AI and Histopathological Images in Detecting Prostate Cancer: A Survey.

Authors:  Sarah M Ayyad; Mohamed Shehata; Ahmed Shalaby; Mohamed Abou El-Ghar; Mohammed Ghazal; Moumen El-Melegy; Nahla B Abdel-Hamid; Labib M Labib; H Arafat Ali; Ayman El-Baz
Journal:  Sensors (Basel)       Date:  2021-04-07       Impact factor: 3.576

  4 in total

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