Literature DB >> 28645224

A Symphony of Cyclases: Specificity in Diguanylate Cyclase Signaling.

Kurt M Dahlstrom1, George A O'Toole1.   

Abstract

Cyclic diguanylate (c-di-GMP) is a near universal signaling molecule produced by diguanylate cyclases that can direct a variety of bacterial behaviors. A major area of research over the last several years has been aimed at understanding how a cell with dozens of diguanylate cyclases can deploy a given subset of them to produce a desired phenotypic outcome without undesired cross talk between c-di-GMP-dependent systems. Several models have been put forward to address this question, including specificity of cyclase activation, tuned binding constants of effector proteins, and physical interaction between cyclases and effectors. Additionally, recent evidence has suggested that there may be a link between the catalytic state of a cyclase and its physical contact with an effector. This review highlights several key studies, examines the proposed global and local models of c-di-GMP signaling specificity in bacteria, and attempts to identify the most fruitful steps that can be taken to better understand how dynamic networks of sibling cyclases and effector proteins result in sensible outputs that govern cellular behavior.

Entities:  

Keywords:  biofilms; c-di-GMP; cyclic diguanylate; diguanylate cyclase; signaling specificity

Mesh:

Substances:

Year:  2017        PMID: 28645224      PMCID: PMC5936083          DOI: 10.1146/annurev-micro-090816-093325

Source DB:  PubMed          Journal:  Annu Rev Microbiol        ISSN: 0066-4227            Impact factor:   15.500


  69 in total

1.  The PilZ domain is a receptor for the second messenger c-di-GMP: the PilZ domain protein YcgR controls motility in enterobacteria.

Authors:  Dmitri A Ryjenkov; Roger Simm; Ute Römling; Mark Gomelsky
Journal:  J Biol Chem       Date:  2006-08-18       Impact factor: 5.157

2.  The response threshold of Salmonella PilZ domain proteins is determined by their binding affinities for c-di-GMP.

Authors:  Ingrid Swanson Pultz; Matthias Christen; Hemantha Don Kulasekara; Andrew Kennard; Bridget Kulasekara; Samuel I Miller
Journal:  Mol Microbiol       Date:  2012-11-19       Impact factor: 3.501

3.  Cyclic di-GMP signaling regulates invasion by Ehrlichia chaffeensis of human monocytes.

Authors:  Yumi Kumagai; Junji Matsuo; Yoshihiro Hayakawa; Yasuko Rikihisa
Journal:  J Bacteriol       Date:  2010-06-18       Impact factor: 3.490

4.  Vibrio cholerae VpsT regulates matrix production and motility by directly sensing cyclic di-GMP.

Authors:  Petya V Krasteva; Jiunn C N Fong; Nicholas J Shikuma; Sinem Beyhan; Marcos V A S Navarro; Fitnat H Yildiz; Holger Sondermann
Journal:  Science       Date:  2010-02-12       Impact factor: 47.728

Review 5.  Cyclic di-GMP: the first 25 years of a universal bacterial second messenger.

Authors:  Ute Römling; Michael Y Galperin; Mark Gomelsky
Journal:  Microbiol Mol Biol Rev       Date:  2013-03       Impact factor: 11.056

6.  Riboswitches in eubacteria sense the second messenger cyclic di-GMP.

Authors:  N Sudarsan; E R Lee; Z Weinberg; R H Moy; J N Kim; K H Link; R R Breaker
Journal:  Science       Date:  2008-07-18       Impact factor: 47.728

7.  Comparative analysis of diguanylate cyclase and phosphodiesterase genes in Klebsiella pneumoniae.

Authors:  Diana P Cruz; Mónica G Huertas; Marcela Lozano; Lina Zárate; María Mercedes Zambrano
Journal:  BMC Microbiol       Date:  2012-07-09       Impact factor: 3.605

8.  Cyclic di-GMP is essential for the survival of the lyme disease spirochete in ticks.

Authors:  Ming He; Zhiming Ouyang; Bryan Troxell; Haijun Xu; Akira Moh; Joseph Piesman; Michael V Norgard; Mark Gomelsky; X Frank Yang
Journal:  PLoS Pathog       Date:  2011-06-30       Impact factor: 6.823

9.  The EAL domain protein YciR acts as a trigger enzyme in a c-di-GMP signalling cascade in E. coli biofilm control.

Authors:  Sandra Lindenberg; Gisela Klauck; Christina Pesavento; Eberhard Klauck; Regine Hengge
Journal:  EMBO J       Date:  2013-05-24       Impact factor: 11.598

10.  Occurrence of cyclic di-GMP-modulating output domains in cyanobacteria: an illuminating perspective.

Authors:  Marco Agostoni; Benjamin J Koestler; Christopher M Waters; Barry L Williams; Beronda L Montgomery
Journal:  mBio       Date:  2013-08-13       Impact factor: 7.867

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  33 in total

1.  Flagellar Stators Activate a Diguanylate Cyclase To Inhibit Flagellar Stators

Authors:  Daniel B Kearns
Journal:  J Bacteriol       Date:  2019-08-22       Impact factor: 3.490

Review 2.  Type 1 Does the Two-Step: Type 1 Secretion Substrates with a Functional Periplasmic Intermediate.

Authors:  T Jarrod Smith; Holger Sondermann; George A O'Toole
Journal:  J Bacteriol       Date:  2018-08-24       Impact factor: 3.490

3.  A Multimodal Strategy Used by a Large c-di-GMP Network.

Authors:  Kurt M Dahlstrom; Alan J Collins; Georgia Doing; Jaclyn N Taroni; Timothy J Gauvin; Casey S Greene; Deborah A Hogan; George A O'Toole
Journal:  J Bacteriol       Date:  2018-03-26       Impact factor: 3.490

Review 4.  Mechanistic insights into host adaptation, virulence and epidemiology of the phytopathogen Xanthomonas.

Authors:  Shi-Qi An; Neha Potnis; Max Dow; Frank-Jörg Vorhölter; Yong-Qiang He; Anke Becker; Doron Teper; Yi Li; Nian Wang; Leonidas Bleris; Ji-Liang Tang
Journal:  FEMS Microbiol Rev       Date:  2020-01-01       Impact factor: 16.408

5.  Under Elevated c-di-GMP in Escherichia coli, YcgR Alters Flagellar Motor Bias and Speed Sequentially, with Additional Negative Control of the Flagellar Regulon via the Adaptor Protein RssB.

Authors:  Vincent Nieto; Jonathan D Partridge; Geoffrey B Severin; Run-Zhi Lai; Christopher M Waters; John S Parkinson; Rasika M Harshey
Journal:  J Bacteriol       Date:  2019-12-06       Impact factor: 3.490

6.  Cell Aggregation and Aerobic Respiration Are Important for Zymomonas mobilis ZM4 Survival in an Aerobic Minimal Medium.

Authors:  Sara E Jones-Burrage; Timothy A Kremer; James B McKinlay
Journal:  Appl Environ Microbiol       Date:  2019-05-02       Impact factor: 4.792

Review 7.  Tracking the homeostasis of second messenger cyclic-di-GMP in bacteria.

Authors:  Anushya Petchiappan; Sujay Y Naik; Dipankar Chatterji
Journal:  Biophys Rev       Date:  2020-02-15

8.  Alterocin, an Antibiofilm Protein Secreted by Pseudoalteromonas sp. Strain 3J6.

Authors:  Albane Jouault; Angélique Gobet; Marjolaine Simon; Emilie Portier; Morgan Perennou; Erwan Corre; Fanny Gaillard; David Vallenet; Gurvan Michel; Yannick Fleury; Alexis Bazire; Alain Dufour
Journal:  Appl Environ Microbiol       Date:  2020-10-01       Impact factor: 4.792

9.  Gene Regulation and Transcriptomics.

Authors:  D Scott Samuels; Meghan C Lybecker; X Frank Yang; Zhiming Ouyang; Travis J Bourret; William K Boyle; Brian Stevenson; Dan Drecktrah; Melissa J Caimano
Journal:  Curr Issues Mol Biol       Date:  2020-12-10       Impact factor: 2.081

10.  Evolution of Pseudomonas aeruginosa toward higher fitness under standard laboratory conditions.

Authors:  Igor Grekov; Janne Gesine Thöming; Adrian Kordes; Susanne Häussler
Journal:  ISME J       Date:  2020-12-03       Impact factor: 10.302

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