| Literature DB >> 28638632 |
Md Serajul Haque Faizi1, Necmi Dege2, Kateryna Goleva3.
Abstract
The title dinuclear mercury(II) complex, [Hg2Cl4(C16H19N3)2], synthesized from the pyridine-derived Schiff base (E)-N1,N1-diethyl-N4-[(pyridin-2-yl)methyl-idene]benzene-1,4-di-amine (DPMBD), has inversion symmetry. The five-coordinated HgII atoms have distorted square-pyramidal stereochemistry comprising two N-atom donors from bidentate chelate BPMBD ligands and three Cl-atom donors, two bridging and one monodentate. The dihedral angle between the benzene and the pyridine rings in the BPMBD ligand is 7.55 (4)°. In the crystal, the dinuclear mol-ecules are linked by weak C-H⋯Cl hydrogen bonds, forming zigzag ribbons lying parallel to [001]. Also present in the structure are π-π inter-actions between benzene and pyridine rings [minimum ring-centroid separation = 3.698 (8) Å].Entities:
Keywords: DPMBD; Schiff base; binuclear mercury(II) complex; crystal structure; distorted square-pyramidal coordination; five-coordinated mercury(II) ions
Year: 2017 PMID: 28638632 PMCID: PMC5458297 DOI: 10.1107/S2056989017005874
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, with the atom labelling. Displacement ellipsoids are drawn at the 40% probability level. The unlabelled atoms are related to the labelled atoms by inversion symmetry (symmetry operation: −x + 2, −y + 1, −z + 1).
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C6—H6⋯Cl1i | 0.93 | 2.74 | 3.578 (9) | 151 |
| C1—H1⋯Cl1ii | 0.93 | 2.89 | 3.471 (12) | 122 |
| C1—H1⋯Cl2iii | 0.93 | 2.97 | 3.623 (11) | 129 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 2The crystal packing of the title compound, viewed along the c axis, with hydrogen bonds (Table 1 ▸) shown as dashed lines.
Figure 3The crystal packing of the title compound, viewed approximately along the c axis. The π–π interactions between the benzene and pyridine rings are shown as dotted lines.
Experimental details
| Crystal data | |
| Chemical formula | [Hg2Cl4(C16H19N3)2] |
|
| 1049.66 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 100 |
|
| 8.329 (3), 8.565 (3), 12.936 (4) |
| α, β, γ (°) | 89.043 (8), 81.107 (7), 84.206 (7) |
|
| 907.1 (5) |
|
| 1 |
| Radiation type | Mo |
| μ (mm−1) | 8.78 |
| Crystal size (mm) | 0.20 × 0.15 × 0.12 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.944, 0.981 |
| No. of measured, independent and observed [ | 6272, 3303, 2779 |
|
| 0.037 |
| (sin θ/λ)max (Å−1) | 0.606 |
| Refinement | |
|
| 0.054, 0.156, 1.06 |
| No. of reflections | 3303 |
| No. of parameters | 158 |
| No. of restraints | 57 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 2.56, −2.43 |
Computer programs: APEX2 and SAINT (Bruker, 2003 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2016 (Sheldrick, 2015 ▸) and DIAMOND (Brandenburg & Putz, 2006 ▸).
| [Hg2Cl4(C16H19N3)2] | |
| Triclinic, | |
| Mo | |
| Cell parameters from 3407 reflections | |
| θ = 2.7–26.6° | |
| α = 89.043 (8)° | µ = 8.78 mm−1 |
| β = 81.107 (7)° | |
| γ = 84.206 (7)° | Needle, red |
| 0.20 × 0.15 × 0.12 mm |
| Bruker APEXII CCD diffractometer | 3303 independent reflections |
| Radiation source: sealed tube | 2779 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 25.5°, θmin = 2.4° |
| Absorption correction: multi-scan (SADABS; Bruker, 2003) | |
| 6272 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 2.56 e Å−3 | |
| 3303 reflections | Δρmin = −2.43 e Å−3 |
| 158 parameters | Extinction correction: SHELXL2016 (Sheldrick, 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 57 restraints | Extinction coefficient: 0.0154 (18) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Hg1 | 0.81436 (5) | 0.66012 (4) | 0.57709 (3) | 0.0580 (3) | |
| Cl1 | 0.8912 (3) | 0.3764 (3) | 0.5896 (2) | 0.0565 (6) | |
| Cl2 | 0.8896 (4) | 0.8431 (4) | 0.6955 (3) | 0.0756 (8) | |
| N2 | 0.5206 (9) | 0.6438 (8) | 0.5996 (6) | 0.0418 (16) | |
| N1 | 0.7065 (10) | 0.8114 (9) | 0.4494 (7) | 0.0486 (18) | |
| C5 | 0.5464 (11) | 0.8065 (10) | 0.4459 (7) | 0.0425 (19) | |
| C7 | 0.4285 (19) | 0.564 (2) | 0.6811 (12) | 0.0965 (13) | |
| C6 | 0.4541 (11) | 0.7127 (10) | 0.5239 (7) | 0.045 (2) | |
| H6 | 0.345407 | 0.701618 | 0.519674 | 0.054* | |
| C4 | 0.4711 (14) | 0.8919 (12) | 0.3733 (8) | 0.054 (2) | |
| H4 | 0.361040 | 0.884616 | 0.371099 | 0.064* | |
| C8 | 0.2645 (12) | 0.5445 (14) | 0.6857 (8) | 0.060 (3) | |
| H8 | 0.207736 | 0.588526 | 0.634069 | 0.072* | |
| C2 | 0.7167 (15) | 0.9953 (13) | 0.3116 (9) | 0.062 (3) | |
| H2 | 0.776639 | 1.064049 | 0.268772 | 0.075* | |
| C10 | 0.266 (2) | 0.389 (2) | 0.8458 (13) | 0.1012 (7) | |
| C1 | 0.7883 (14) | 0.9042 (13) | 0.3803 (10) | 0.062 (3) | |
| H1 | 0.899938 | 0.905612 | 0.379875 | 0.075* | |
| C12 | 0.505 (2) | 0.498 (2) | 0.7587 (12) | 0.1012 (7) | |
| H12 | 0.613677 | 0.512565 | 0.760116 | 0.121* | |
| N3 | 0.1794 (12) | 0.3036 (16) | 0.9288 (8) | 0.1012 (9) | |
| C3 | 0.5551 (16) | 0.9872 (13) | 0.3044 (9) | 0.063 (3) | |
| H3 | 0.505047 | 1.044522 | 0.254433 | 0.075* | |
| C9 | 0.186 (2) | 0.462 (2) | 0.7646 (13) | 0.1012 (7) | |
| H9 | 0.075706 | 0.452541 | 0.766178 | 0.121* | |
| C11 | 0.424 (2) | 0.409 (2) | 0.8348 (13) | 0.1012 (7) | |
| H11 | 0.484613 | 0.359696 | 0.882884 | 0.121* | |
| C15 | 0.2584 (16) | 0.2780 (17) | 1.0150 (10) | 0.1012 (7) | |
| H15A | 0.182347 | 0.272105 | 1.079438 | 0.121* | |
| H15B | 0.331868 | 0.357020 | 1.021477 | 0.121* | |
| C16 | 0.3500 (18) | 0.1193 (16) | 0.9831 (12) | 0.1012 (7) | |
| H16A | 0.413710 | 0.082530 | 1.036072 | 0.152* | |
| H16B | 0.273224 | 0.045619 | 0.975182 | 0.152* | |
| H16C | 0.420937 | 0.129507 | 0.917922 | 0.152* | |
| C13 | 0.0131 (13) | 0.3113 (19) | 0.9350 (12) | 0.1012 (7) | |
| H13A | −0.023986 | 0.413409 | 0.909047 | 0.121* | |
| H13B | −0.033164 | 0.307139 | 1.008496 | 0.121* | |
| C14 | −0.059 (2) | 0.1883 (19) | 0.8782 (12) | 0.1012 (7) | |
| H14A | −0.176271 | 0.208254 | 0.889439 | 0.152* | |
| H14B | −0.019235 | 0.192811 | 0.804657 | 0.152* | |
| H14C | −0.028458 | 0.086028 | 0.904586 | 0.152* |
| Hg1 | 0.0436 (3) | 0.0551 (3) | 0.0792 (4) | −0.00681 (18) | −0.0217 (2) | 0.0087 (2) |
| Cl1 | 0.0404 (12) | 0.0548 (13) | 0.0761 (16) | −0.0047 (10) | −0.0161 (11) | 0.0139 (11) |
| Cl2 | 0.0711 (19) | 0.0739 (18) | 0.089 (2) | −0.0146 (15) | −0.0278 (16) | −0.0072 (15) |
| N2 | 0.039 (4) | 0.037 (4) | 0.052 (4) | −0.007 (3) | −0.010 (3) | 0.000 (3) |
| N1 | 0.042 (4) | 0.041 (4) | 0.065 (5) | −0.007 (3) | −0.012 (4) | −0.004 (3) |
| C5 | 0.040 (5) | 0.039 (4) | 0.049 (5) | −0.001 (4) | −0.012 (4) | −0.010 (4) |
| C7 | 0.080 (2) | 0.124 (2) | 0.089 (2) | −0.025 (2) | −0.018 (2) | 0.032 (2) |
| C6 | 0.039 (5) | 0.042 (4) | 0.057 (5) | −0.005 (4) | −0.018 (4) | −0.007 (4) |
| C4 | 0.056 (6) | 0.054 (6) | 0.053 (5) | 0.000 (5) | −0.022 (5) | 0.002 (4) |
| C8 | 0.038 (5) | 0.087 (8) | 0.058 (6) | −0.011 (5) | −0.012 (4) | 0.020 (5) |
| C2 | 0.073 (8) | 0.052 (6) | 0.060 (6) | −0.010 (5) | −0.003 (5) | 0.007 (5) |
| C10 | 0.0849 (13) | 0.1288 (13) | 0.0928 (13) | −0.0231 (13) | −0.0184 (12) | 0.0329 (13) |
| C1 | 0.046 (6) | 0.056 (6) | 0.083 (7) | −0.009 (5) | −0.005 (5) | 0.009 (5) |
| C12 | 0.0849 (13) | 0.1288 (13) | 0.0928 (13) | −0.0231 (13) | −0.0184 (12) | 0.0329 (13) |
| N3 | 0.0848 (16) | 0.1290 (17) | 0.0927 (15) | −0.0230 (16) | −0.0183 (15) | 0.0330 (16) |
| C3 | 0.077 (8) | 0.049 (5) | 0.064 (6) | 0.003 (5) | −0.018 (6) | 0.002 (5) |
| C9 | 0.0849 (13) | 0.1288 (13) | 0.0928 (13) | −0.0231 (13) | −0.0184 (12) | 0.0329 (13) |
| C11 | 0.0849 (13) | 0.1288 (13) | 0.0928 (13) | −0.0231 (13) | −0.0184 (12) | 0.0329 (13) |
| C15 | 0.0849 (13) | 0.1288 (13) | 0.0928 (13) | −0.0231 (13) | −0.0184 (12) | 0.0329 (13) |
| C16 | 0.0849 (13) | 0.1288 (13) | 0.0928 (13) | −0.0231 (13) | −0.0184 (12) | 0.0329 (13) |
| C13 | 0.0849 (13) | 0.1288 (13) | 0.0928 (13) | −0.0231 (13) | −0.0184 (12) | 0.0329 (13) |
| C14 | 0.0849 (13) | 0.1288 (13) | 0.0928 (13) | −0.0231 (13) | −0.0184 (12) | 0.0329 (13) |
| Hg1—Cl1 | 2.459 (3) | C11—C12 | 1.37 (2) |
| Hg1—Cl2 | 2.402 (4) | C13—C14 | 1.52 (2) |
| Hg1—N1 | 2.317 (9) | C15—C16 | 1.52 (2) |
| Hg1—N2 | 2.437 (8) | C1—H1 | 0.9300 |
| Hg1—Cl1i | 2.999 (3) | C2—H2 | 0.9300 |
| N1—C1 | 1.339 (15) | C3—H3 | 0.9300 |
| N1—C5 | 1.346 (13) | C4—H4 | 0.9300 |
| N2—C6 | 1.302 (12) | C6—H6 | 0.9300 |
| N2—C7 | 1.414 (18) | C8—H8 | 0.9300 |
| N3—C10 | 1.43 (2) | C9—H9 | 0.9300 |
| N3—C13 | 1.370 (15) | C11—H11 | 0.9300 |
| N3—C15 | 1.384 (17) | C12—H12 | 0.9300 |
| C1—C2 | 1.342 (17) | C13—H13A | 0.9700 |
| C2—C3 | 1.372 (19) | C13—H13B | 0.9700 |
| C3—C4 | 1.360 (16) | C14—H14A | 0.9600 |
| C4—C5 | 1.370 (14) | C14—H14B | 0.9600 |
| C5—C6 | 1.453 (13) | C14—H14C | 0.9600 |
| C7—C8 | 1.385 (19) | C15—H15A | 0.9700 |
| C7—C12 | 1.36 (2) | C15—H15B | 0.9700 |
| C8—C9 | 1.35 (2) | C16—H16A | 0.9600 |
| C9—C10 | 1.43 (2) | C16—H16B | 0.9600 |
| C10—C11 | 1.33 (2) | C16—H16C | 0.9600 |
| Cl1—Hg1—Cl2 | 121.69 (10) | N1—C1—H1 | 118.00 |
| Cl1—Hg1—N1 | 131.9 (2) | C2—C1—H1 | 118.00 |
| Cl1—Hg1—N2 | 96.06 (17) | C1—C2—H2 | 120.00 |
| Cl1—Hg1—Cl1i | 79.90 (8) | C3—C2—H2 | 120.00 |
| Cl2—Hg1—N1 | 105.7 (2) | C2—C3—H3 | 121.00 |
| Cl2—Hg1—N2 | 112.60 (19) | C4—C3—H3 | 121.00 |
| Cl1i—Hg1—Cl2 | 102.68 (10) | C3—C4—H4 | 120.00 |
| N1—Hg1—N2 | 71.2 (3) | C5—C4—H4 | 120.00 |
| Cl1i—Hg1—N1 | 82.2 (2) | N2—C6—H6 | 119.00 |
| Cl1i—Hg1—N2 | 140.17 (19) | C5—C6—H6 | 119.00 |
| Hg1—Cl1—Hg1i | 100.10 (8) | C7—C8—H8 | 120.00 |
| Hg1—N1—C1 | 125.9 (7) | C9—C8—H8 | 120.00 |
| Hg1—N1—C5 | 116.6 (6) | C8—C9—H9 | 119.00 |
| C1—N1—C5 | 117.5 (9) | C10—C9—H9 | 119.00 |
| Hg1—N2—C6 | 112.2 (6) | C10—C11—H11 | 118.00 |
| Hg1—N2—C7 | 125.9 (8) | C12—C11—H11 | 117.00 |
| C6—N2—C7 | 121.8 (10) | C7—C12—H12 | 120.00 |
| C10—N3—C13 | 117.2 (12) | C11—C12—H12 | 120.00 |
| C10—N3—C15 | 114.4 (11) | N3—C13—H13A | 108.00 |
| C13—N3—C15 | 123.0 (11) | N3—C13—H13B | 108.00 |
| N1—C1—C2 | 123.0 (11) | C14—C13—H13A | 108.00 |
| C1—C2—C3 | 120.1 (11) | C14—C13—H13B | 108.00 |
| C2—C3—C4 | 117.3 (11) | H13A—C13—H13B | 107.00 |
| C3—C4—C5 | 120.9 (11) | C13—C14—H14A | 109.00 |
| N1—C5—C4 | 121.0 (9) | C13—C14—H14B | 110.00 |
| N1—C5—C6 | 118.1 (8) | C13—C14—H14C | 110.00 |
| C4—C5—C6 | 120.8 (9) | H14A—C14—H14B | 109.00 |
| N2—C6—C5 | 121.3 (8) | H14A—C14—H14C | 109.00 |
| N2—C7—C8 | 124.1 (13) | H14B—C14—H14C | 110.00 |
| N2—C7—C12 | 118.6 (14) | N3—C15—H15A | 112.00 |
| C8—C7—C12 | 117.2 (14) | N3—C15—H15B | 112.00 |
| C7—C8—C9 | 120.6 (12) | C16—C15—H15A | 112.00 |
| C8—C9—C10 | 122.8 (15) | C16—C15—H15B | 112.00 |
| N3—C10—C9 | 121.5 (14) | H15A—C15—H15B | 110.00 |
| N3—C10—C11 | 125.2 (15) | C15—C16—H16A | 109.00 |
| C9—C10—C11 | 113.3 (15) | C15—C16—H16B | 109.00 |
| C10—C11—C12 | 125.2 (16) | C15—C16—H16C | 109.00 |
| C7—C12—C11 | 120.7 (16) | H16A—C16—H16B | 109.00 |
| N3—C13—C14 | 118.6 (13) | H16A—C16—H16C | 109.00 |
| N3—C15—C16 | 98.2 (11) | H16B—C16—H16C | 109.00 |
| Cl2—Hg1—Cl1—Hg1i | −98.74 (12) | C7—N2—C6—C5 | 174.3 (10) |
| N1—Hg1—Cl1—Hg1i | 69.9 (3) | Hg1—N2—C7—C8 | −173.5 (10) |
| N2—Hg1—Cl1—Hg1i | 139.95 (19) | Hg1—N2—C7—C12 | 4.6 (19) |
| Cl1i—Hg1—Cl1—Hg1i | 0.00 (7) | C6—N2—C7—C8 | 3 (2) |
| Cl1—Hg1—N1—C1 | −104.6 (8) | C6—N2—C7—C12 | −178.5 (12) |
| Cl1—Hg1—N1—C5 | 76.4 (7) | C13—N3—C10—C9 | −8 (2) |
| Cl2—Hg1—N1—C1 | 65.4 (9) | C13—N3—C10—C11 | 172.1 (16) |
| Cl2—Hg1—N1—C5 | −113.6 (6) | C15—N3—C10—C9 | −162.9 (15) |
| N2—Hg1—N1—C1 | 174.4 (9) | C15—N3—C10—C11 | 17 (2) |
| N2—Hg1—N1—C5 | −4.6 (6) | C10—N3—C13—C14 | 91.1 (18) |
| Cl1i—Hg1—N1—C1 | −35.7 (8) | C15—N3—C13—C14 | −116.5 (16) |
| Cl1i—Hg1—N1—C5 | 145.3 (7) | C10—N3—C15—C16 | −92.0 (14) |
| Cl1—Hg1—N2—C6 | −125.6 (6) | C13—N3—C15—C16 | 114.9 (15) |
| Cl1—Hg1—N2—C7 | 51.6 (10) | N1—C1—C2—C3 | −5.1 (18) |
| Cl2—Hg1—N2—C6 | 106.4 (6) | C1—C2—C3—C4 | 4.0 (17) |
| Cl2—Hg1—N2—C7 | −76.5 (10) | C2—C3—C4—C5 | −0.7 (16) |
| N1—Hg1—N2—C6 | 6.7 (6) | C3—C4—C5—N1 | −1.7 (15) |
| N1—Hg1—N2—C7 | −176.1 (10) | C3—C4—C5—C6 | 175.9 (9) |
| Cl1i—Hg1—N2—C6 | −44.1 (7) | N1—C5—C6—N2 | 4.7 (13) |
| Cl1i—Hg1—N2—C7 | 133.1 (9) | C4—C5—C6—N2 | −173.0 (9) |
| Cl1—Hg1—Cl1i—Hg1i | 0.00 (9) | N2—C7—C8—C9 | 177.8 (14) |
| Cl2—Hg1—Cl1i—Hg1i | 120.45 (11) | C12—C7—C8—C9 | 0 (2) |
| N1—Hg1—Cl1i—Hg1i | −135.1 (2) | N2—C7—C12—C11 | −174.8 (14) |
| N2—Hg1—Cl1i—Hg1i | −87.4 (3) | C8—C7—C12—C11 | 3 (2) |
| Hg1—N1—C1—C2 | −176.5 (9) | C7—C8—C9—C10 | −1 (2) |
| C5—N1—C1—C2 | 2.6 (16) | C8—C9—C10—N3 | 179.4 (14) |
| Hg1—N1—C5—C4 | 179.9 (7) | C8—C9—C10—C11 | −1 (2) |
| Hg1—N1—C5—C6 | 2.3 (10) | N3—C10—C11—C12 | −176.2 (16) |
| C1—N1—C5—C4 | 0.8 (14) | C9—C10—C11—C12 | 4 (3) |
| C1—N1—C5—C6 | −176.9 (9) | C10—C11—C12—C7 | −6 (3) |
| Hg1—N2—C6—C5 | −8.5 (10) |
| H··· | ||||
| C6—H6···Cl1ii | 0.93 | 2.74 | 3.578 (9) | 151 |
| C1—H1···Cl1i | 0.93 | 2.89 | 3.471 (12) | 122 |
| C1—H1···Cl2iii | 0.93 | 2.97 | 3.623 (11) | 129 |