Lise Schoonen1, Sjors Maassen1, Roeland J M Nolte1, Jan C M van Hest2,1. 1. Radboud University, Institute for Molecules and Materials , Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands. 2. Eindhoven University of Technology , P.O. Box 513 (STO 3.31), 5600 MB Eindhoven, The Netherlands.
Abstract
Virus-like particles are very interesting tools for application in bionanotechnology, due to their monodisperse features and biocompatibility. In particular, the cowpea chlorotic mottle virus (CCMV) capsid has been studied extensively as it can be assembled and disassembled reversibly, facilitating cargo encapsulation. CCMV is, however, only stable at physiological conditions when its endogenous nucleic acid cargo is present. To gain more flexibility in the type of cargo encapsulated and to broaden the window of operation, it is interesting to improve the stability of the empty virus-like particles. Here, a method is described to utilize the CCMV capsid at close to physiological conditions as a stable, enzyme-filled nanoreactor. As a proof-of-principle, the encapsulation of T4 lysozyme (T4L) was chosen; this enzyme is a promising antibiotic, but its clinical application is hampered by, for example, its cationic character. It was shown that four T4L molecules can successfully be encapsulated inside CCMV capsids, while remaining catalytically active, which could thus improve the enzyme's application potential.
Virus-like particles are very interesting tools for application in bionanotechnology, due to their monodisperse features and biocompatibility. In particular, the cowpea chlorotic mottle virus (CCMV) capsid has been studied extensively as it can be assembled and disassembled reversibly, facilitating cargo encapsulation. CCMV is, however, only stable at physiological conditions when its endogenous nucleic acid cargo is present. To gain more flexibility in the type of cargo encapsulated and to broaden the window of operation, it is interesting to improve the stability of the empty virus-like particles. Here, a method is described to utilize the CCMV capsid at close to physiological conditions as a stable, enzyme-filled nanoreactor. As a proof-of-principle, the encapsulation of T4 lysozyme (T4L) was chosen; this enzyme is a promising antibiotic, but its clinical application is hampered by, for example, its cationic character. It was shown that four T4L molecules can successfully be encapsulated inside CCMV capsids, while remaining catalytically active, which could thus improve the enzyme's application potential.
Virus-like particles
(VLPs) are protein-based nanocages composed
of a discrete number of viral capsid proteins.[1] In contrast to some other types of nanoparticles, such as liposomes
or polymeric vesicles, VLPs are very monodisperse in shape and size.
Of special interest is the cowpea chlorotic mottle virus (CCMV), an
icosahedral plant virus, which normally adopts T =
3 symmetry. This capsid consists of 180 identical 20 kDa capsid proteins
and has an inner and outer diameter of 18 and 28 nm, respectively.[2,3] The CCMV VLP is able to undergo reversible, pH-dependent assembly
and disassembly, even in the absence of its viral RNA.[4] At pH 7.5, the capsid disassembles into 90 protein dimers,
and by lowering the pH to 5.0, the original structure is reformed.
This property has been used to encapsulate inorganic materials,[5,6] negatively charged polymers,[7,8] and enzymes[9] by adding these molecules to the media during
the assembly process of the protein dimers.The endogenous assembly
behavior of CCMV VLPs does not allow for
their facile application in biological settings, as the capsids will
disassemble at a physiologically neutral pH. Therefore, a modified
protein-based block copolymer of the CCMV capsid protein, containing
an N-terminal elastin-like polypeptide (ELP) block, was previously
developed in our lab.[10] ELPs are stimulus-responsive
polymers, derived from elastin, which can switch from a water-soluble
state to a collapsed, insoluble state, upon a change in the environmental
conditions, such as temperature, pH, (bivalent) cations, and salt
concentration of the solution.[11,12] ELPs consist of repeats
of the VPGXG pentapeptide, where X is any natural amino acid except
proline. Previously, the stimulus-responsive polypeptide block was
placed at the N-terminal end of the CCMV capsid protein, replacing
the cationic RNA-binding domain. The introduction of the ELP resulted
in a new assembly pathway: ELP-induced assembly resulted in the formation
of T = 1 capsids, consisting of 30 protein dimers,
after an increase of the salt concentration at pH 7.5. Capsids with
a T = 3 symmetry could still be formed via the endogenous
pH-induced assembly pathway.Even though the newly developed
ELP-CCMV capsid proteins could
assemble at physiological pH, still a high salt concentration (∼2
M NaCl) was needed to form the capsids. Therefore, a third assembly
mechanism for the ELP-CCMV capsid proteins was introduced, making
use of the metal-binding properties of the hexahistidine tags at the
N-terminus of ELP-CCMV, which had initially been introduced to facilitate
protein purification through affinity chromatography.[13] The addition of divalent ions to ELP-CCMV, such as nickel
or cobalt, resulted in local clustering of the capsid proteins, lowering
the transition temperature of the ELP blocks and subsequently leading
to capsid assembly at pH 7.5, without the need for a high salt concentration.
This has set the stage to use CCMV capsids as enzyme nanoreactors
at non-native and physiological conditions.Lysozyme was chosen
as the model enzyme to be encapsulated in the
nanoreactor. This enzyme plays a key role in the human immune system,
as it protects our body from Gram-positive pathogens, such as Bacillus and Streptococcus. It does so by cleaving the core β-(1,4) glycosidic bond between N-acetylmuramic acid and the fourth carbon atom of the N-acetylglucosamine of bacterial cell wall peptidoglycans,
resulting in bacterial lysis and death.[14] Humanlysozyme has been successfully applied in early studies to
treat experimentally induced pneumonia using hamster models, which
has laid the foundation for clinical testing of lysozyme for antibiotic
treatments.[15,16] The enzyme has some disadvantageous
properties, however, which hamper its application in a clinical setting.
For instance, the cationic character of lysozyme can lead to aggregation
with negatively charged biopolymers, resulting in inhibition of its
antibacterial properties. Additionally, lysozyme-specific inhibitors
exist, which also limits the clinical efficacy of lysozyme. So far,
only genetic engineering has been used to address these problems.[17−20] In some cases, the engineered variants did indeed show improved
properties. Changing the lysozyme genetic sequence, however, has also
led to the introduction of new unexpected and unfavorable properties.We set out to encapsulate lysozyme in a nanocage structure, in
order to protect it against harmful external conditions or molecules,
allowing the enzyme to remain active without the need for extensive
genetic engineering of the T4L sequence. Since the lysozyme activity
drops significantly upon an increase in ionic strength, a nanoreactor
is required which is stable under physiological conditions.[21,22] We hypothesized that the metal ion-stabilized ELP-CCMV particles
might be very suitable nanocarriers for this purpose.In order
to encapsulate lysozyme, statistical encapsulation during
assembly of the ELP-CCMV capsids would probably not yield a high enough
encapsulation efficiency due to the cationic character of lysozyme.
Therefore, we chose to use a covalent coupling strategy, which has
previously been published by our group.[23,24] Briefly, we
used Sortase A (SrtA) to modify the N-terminus of ELP-CCMV with different
cargoes, which eventually end up at the interior of the VLPs (Figure ). SrtA is present
in Gram-positive bacteria, where it anchors surface proteins to the
bacterial cell wall. It recognizes proteins with the sorting signal
LPXTG (where X = any amino acid). SrtA cleaves the bond between threonine
and glycine, after which an N-terminal glycine residue attacks the
intermediate.
Figure 1
Schematic representation of the Sortase A-mediated N-terminal
functionalization
of hexahistidine-tagged ELP-CCMV capsid protein dimers with LPETG-modified
T4 lysozyme and subsequent enzyme encapsulation via capsid formation.
Capsid stabilization with Ni2+ ions results in capsids
which are stable at low NaCl concentrations and allows the degradation
of the cell wall of M. luteus by lysozyme.
Adapted in part with permission from ref (13). Copyright 2016 Wiley-VCH Verlag GmbH &
Co. KGaA, Weinheim.
Schematic representation of the Sortase A-mediated N-terminal
functionalization
of hexahistidine-tagged ELP-CCMV capsid protein dimers with LPETG-modified
T4 lysozyme and subsequent enzyme encapsulation via capsid formation.
Capsid stabilization with Ni2+ ions results in capsids
which are stable at low NaCl concentrations and allows the degradation
of the cell wall of M. luteus by lysozyme.
Adapted in part with permission from ref (13). Copyright 2016 Wiley-VCH Verlag GmbH &
Co. KGaA, Weinheim.We aimed to introduce
the sorting signal LPETG onto the C-terminus
of T4 lysozyme (T4L), using a single step of genetic engineering,
in order to couple it to the N-terminus of ELP-CCMV using SrtA (Figure ). After optimization
of the coupling reaction and subsequent assembly and metal ion-mediated
stabilization of the capsids, we investigated the activity of lysozyme
after coupling to ELP-CCMV by monitoring the degradation of the cell
walls of Micrococcus luteus (M. luteus), a Gram-positive bacterium.
Experimental Section
Materials
Hot start II HF DNA polymerase,
dNTPs, restriction
enzymes, and T4 DNA ligase were obtained from New England Biolabs.
The DNA oligos were synthesized by Biolegio. Ampicillin was purchased
from MP Biomedicals. Chloramphenicol was obtained from Sigma-Aldrich.
Isopropyl β-d-1-thiogalactopyranoside (IPTG) was purchased
from Acros. Ni-NTAagarose beads were obtained from Qiagen. The fluorescein
conjugated Micrococcus luteus was purchased
as part of the EnzChek Lysozyme Assay Kit from Fisher Scientific.
UV–Vis Absorbance Measurements
Protein concentrations
were measured on a Varian Cary 50 Conc UV–vis spectrometer
using a quartz cuvette with a path length of 3 mm. Protein concentrations
were calculated using the theoretical extinction coefficients.[25] Samples were centrifuged prior to the measurements.
Mass Spectrometry
Protein mass characterization was
performed by electrospray ionization time-of-flight (ESI-TOF) on a
JEOL AccuTOF CS. Deconvoluted mass spectra were obtained using MagTran
1.03 b2. Isotopically averaged molecular weights were calculated using
the “Protein Calculator v3.4” at http://protcalc.sourceforge.net. Protein samples were desalted by spin filtration with MQ (final
concentrations approximately 20 μM).
Size Exclusion Chromatography
(SEC)
SEC measurements
were performed on a Superose 6 increase 10/300 column (GE Healthcare).
Analytical and preparative SEC measurements were executed on a Shimadzu
LC-2010AHT HPLC and Agilent 1260 bioinert HPLC, respectively. Samples
were separated on the column with a flow rate of 0.5 mL/min.
Transmission
Electron Microscopy (TEM)
TEM grids (FCF-200-Cu,
EMS) were glow-discharged using a Cressington carbon coater and power
unit. Protein samples (0.2 mg/mL, 5 μL) were applied on the
glow-discharged grids and incubated for 1 min. The samples were carefully
removed using a filter paper and the grid was allowed to dry for at
least 15 min. Then the grid was negatively stained by applying 2%
uranyl acetate in water (5 μL). The staining solution was removed
after 15 s and the grid was allowed to dry for at least 15 min. The
samples were analyzed on a JEOL JEM-1010 TEM.
Microplate Reader Experiments
Microplate reader experiments
were performed on a Tecan Spark 10 M microplate reader at 21 °C.
Samples were centrifuged prior to analysis. Buffers were filtered
prior to use. Excitation and emission wavelengths were set to 485
and 530 nm, respectively. All measurements were done in triplicate.
Dynamic Light Scattering (DLS) Measurements
DLS measurements
were performed on a Malvern Zetasizer Nano ZSP at 20 °C. Samples
were centrifuged prior to analysis. Buffers were filtered prior to
use. All measurements were done in triplicate, and the average of
the triplicate measurements was plotted.
SrtA-Mediated Coupling
Experiments
For a typical SrtA-mediated
coupling experiment, stock solutions of SrtA, G-ELP-CCMV, and T4L-LPETG
were prepared in Sortase buffer. If a component had been dissolved
in another buffer, it was spin filtrated to Sortase buffer (10 kDa
MWCO, 3 × 10 min). The components were added together to final
concentrations of 0–100 μM SrtA, 50 μM G-ELP-CCMV,
and 50 μM T4L-LPETG. The solutions were shaken at 21 °C
for 24 h. The reaction progress was followed by SDS-PAGE analysis.
SrtA-Mediated Coupling Experiments, Followed by Capsid Purification
For a typical SrtA-mediated coupling experiment, stock solutions
of SrtA, G-ELP-CCMV, and T4L-LPETG were prepared in Sortase buffer.
If a component had been dissolved in another buffer, it was spin filtrated
to Sortase buffer (10 kDa MWCO, 3 × 10 min). The components were
added together to final concentrations of 0/10 μM SrtA, 50 μM
G-ELP-CCMV, and 0/50 μM T4L-LPETG. The solutions were shaken
at 21 °C for 3 h. The capsids were assembled to either pH 5.0
capsid buffer by spin filtration (10 kDa MWCO, 3 × 10 min) or
pH 7.5 capsid buffer by dialysis (Spectra/Por 2 dialysis tubing, 12–14
kDa MWCO, 25 mm flat width, 3 × 20 min). Subsequently, the capsids
were isolated using preparative SEC. The combined capsid fractions
were concentrated by spin filtration, analyzed, and used for further
experiments.
Activity Assay with Free T4L
Lysozyme
activity of free
T4L and T4L-LPETG was measured by observing the degradation of fluorescently
labeled M. luteus cell walls (EnzChek
lysozyme assay). An increase in fluorescence indicated the presence
of active lysozyme, as the degradation of the cell walls reduced the
quenching of the fluorescent groups. The fluorescently labeled substrate
was diluted from 1 mg/mL in MQ to 50 μM in the desired buffer.
The substrate (50 μL) was added to T4L or T4L-LPETG (50 μL,
2 μM in the desired buffer) in triplicate in a 96-well plate.
The fluorescence intensity was then followed for 60 min at 21 °C
with intermediate shaking steps on a Tecan Spark 10 M microplate reader
(excitation wavelength 485 nm, emission wavelength 530 nm). The initial
slopes of the curves were taken as a measure of the hydrolytic activity.
Activity Assay with Encapsulated T4L (and Related Controls)
The isolated and concentrated capsid fractions (see SrtA-Mediated Coupling Experiments, Followed by Capsid
Purification) were diluted to a concentration of approximately
200 μM by measuring the OD280 of the concentrated
capsid solution and diluting to an OD280 of 1.4. Subsequently,
NiCl2 (900 μM in either pH 5.0 capsid buffer or pH
7.5 capsid buffer) or buffer (equal volume as the capsid solution)
was added (final protein concentration is approximately 100 μM).
The mixtures were incubated for 30 min at room temperature. Subsequently,
the mixtures were dialyzed to reaction buffer (Spectra/Por 4 dialysis
tubing, 12–14 kDa MWCO, 10 mm flat width, 3 × 20 min;
solutions with Ni2+ separately from solutions without Ni2+ ions, to prevent potential capsid formation in the control
samples during dialysis). The activity assay with the capsids was
then executed as described in the section Activity
Assay with Free T4L, using 50 μL of the capsid solution
of approximately 100 μM per reaction.
Results and Discussion
The ELP-CCMV construct was designed such, that it displayed a glycine
residue on its N-terminus for the SrtA reaction (G-ELP-CCMV). A T4L
construct was modified to display the Sortase recognition motif LPETG
at its C-terminus (T4L-LPETG). A hexahistidine tag was additionally
included at the C-terminus of T4L-LPETG, for facile purification via
affinity chromatography. As a control, a T4L construct was prepared
with a C-terminal hexahistidine tag, but lacking the LPETG recognition
motif. The proteins were subsequently expressed in Escherichia coli (E. coli), followed by purification through Ni2+ affinity chromatography
(see Supporting Information for experimental
procedures and characterization of the expressed proteins).Next, the Sortase-mediated coupling of T4L-LPETG to G-ELP-CCMV
was evaluated. To this end, different equivalents of SrtA were added
to a mixture of T4L-LPETG and G-ELP-CCMV. The coupling reaction was
followed over time by polyacrylamide gel electrophoresis (SDS-PAGE; Figure A). Formation of
both the intermediate T4L-SrtA and the desired product T4L-ELP-CCMV
could be observed over time. As expected, the addition of higher equivalents
of SrtA, compared to the reactants, resulted in a faster reaction
and more product formation after 24 h, as indicated by quantitative
ImageJ analysis of the SDS-PAGE results (Figure B). Product formation was further confirmed
by electrospray ionization time-of-flight (ESI-TOF) mass spectrometry
analysis of the reaction mixtures after 24 h (Figure C). No product formation was observed using
SDS-PAGE and ESI-TOF analysis when no SrtA was added to the reaction
mixture (Figures S1 and 2D).
Figure 2
Analysis of the SrtA-mediated coupling of T4L-LPETG to G-ELP-CCMV.
(A) SDS-PAGE analysis of the conjugation over time, with different
equivalents of SrtA. Protein bands were visualized by Coomassie blue
staining. (B) Conversions of G-ELP-CCMV to T4L-LPETG-ELP-CCMV after
7 and 24 h, based on quantitative ImageJ analysis of the SDS-PAGE
results shown in (A). (C) Deconvoluted ESI-TOF mass spectrum of a
reaction mixture with 1.0 equiv SrtA after 24 h. (D) Deconvoluted
ESI-TOF mass spectrum of a reaction mixture with 0 equiv SrtA after
24 h. The expected molecular weights are 21947.5 Da (SrtA, blue),
22253.4 Da (G-ELP-CCMV, pink), 19904.6/20035.8 Da (T4L-LPETG/M-T4L-LPETG,
yellow), and 41203.1/41334.3 Da (T4L-ELP-CCMV/M-T4L-ELP-CCMV, green).
Analysis of the SrtA-mediated coupling of T4L-LPETG to G-ELP-CCMV.
(A) SDS-PAGE analysis of the conjugation over time, with different
equivalents of SrtA. Protein bands were visualized by Coomassie blue
staining. (B) Conversions of G-ELP-CCMV to T4L-LPETG-ELP-CCMV after
7 and 24 h, based on quantitative ImageJ analysis of the SDS-PAGE
results shown in (A). (C) Deconvoluted ESI-TOF mass spectrum of a
reaction mixture with 1.0 equiv SrtA after 24 h. (D) Deconvoluted
ESI-TOF mass spectrum of a reaction mixture with 0 equiv SrtA after
24 h. The expected molecular weights are 21947.5 Da (SrtA, blue),
22253.4 Da (G-ELP-CCMV, pink), 19904.6/20035.8 Da (T4L-LPETG/M-T4L-LPETG,
yellow), and 41203.1/41334.3 Da (T4L-ELP-CCMV/M-T4L-ELP-CCMV, green).A conventional way to monitor
lysozyme activity is to follow degradation
of lyophilized M. luteus cells. In
this assay, a decrease in turbidity of the cell wall suspension indicates
the presence of active lysozyme. Even though this assay has been the
benchmark in lysozyme activity assays for a long time, the sensitivity
and reproducibility of this assay are not optimal. In another procedure,
the M. luteus cell walls are fluorescently
labeled to such a degree, that the fluorescence becomes quenched.
If now lysozyme-catalyzed degradation of the cell walls takes place,
a dramatic increase of fluorescence occurs, making this assay much
more sensitive. We chose to use the fluorescence-based assay for the
next series of experiments.First, the activity of hexahistidine-tagged
T4L and the LPETG-modified
variant were tested in the benchmark phosphate buffer pH 7.5, supplied
with the substrate kit (Figure S2). Significant
activity was observed for both enzymes under the experimental conditions
used. A slight decrease in activity was observed as a consequence
of the introduction of the LPETG sequence in T4L-LPETG. Next, we tested
whether T4L would become inactive under conditions at which the G-ELP-CCMV
capsid proteins are assembled, that is, pH 5.0 capsid buffer or pH
7.5 capsid buffer with 2.0 M NaCl. In neither buffer, activity was
observed. Also, in pH 7.5 dimer buffer, containing 500 mM NaCl, no
activity could be observed. Reducing the NaCl concentration of the
pH 7.5 dimer buffer to 150 mM did result in lysozyme activity. Additionally,
lowering the Tris·HCl concentration from 50 to 10 mM further
increased the activity. At pH 5, no activity was observed at all,
even upon lowering the ionic strength of the buffer. These results
confirm that, in order to ensure activity of the encapsulated T4L,
further stabilization of the G-ELP-CCMV capsids with metal ions is
required as no lysozyme activity was observed in buffers in which
the capsids remain assembled without additional stabilization.Subsequently, a protocol was developed for capsid assembly and
stabilization from a SrtA reaction mixture, containing modified and
nonmodified G-ELP-CCMV capsid protein dimers, SrtA and free T4L-LPETG.
This was done based on previous work on both the SrtA-mediated modification
of the N-terminus of CCMV capsid proteins and Ni2+-induced
capsid formation of ELP-CCMV.[13,23,24] In the first attempt, Ni2+ ions were directly added to
the reaction mixture to induce the formation of stabilized capsids,
followed by preparative size exclusion chromatography (SEC) purification
of the assembled capsids. This, however, did not lead to the formation
of monodisperse capsids, as indicated by SEC analysis (Figure S3). Instead, tailing of the capsid peak
was observed and a very low amount of capsids was obtained. A possible
explanation could be that the Ni2+ ions also interact with
other proteins in the solution with a hexahistidine tag, such as SrtA
and free T4L-LPETG. Therefore, it was decided to first induce capsid
formation from the SrtA reaction mixture via either pH-induced assembly
or salt-induced assembly, followed by preparative SEC purification
and subsequent stabilization of the capsids with Ni2+ ions.
Both assembly methods, that is, lowering the pH of the reaction mixture
from 7.5 to 5.0 or increasing the NaCl concentration of the reaction
mixture from 150 to 2000 mM, were tested, and both resulted in the
formation of capsids from the reaction mixtures (Figure A). After successful purification
of both the T = 3 and T = 1 capsids,
it was tested whether these capsids could be stabilized by Ni2+ ions. To this end, the capsids were incubated with Ni2+ ions and subsequently dialyzed to the T4L-compatible pH
7.5 dimer buffer with reduced NaCl and Tris·HCl concentrations
(will be referred to as reaction buffer). DLS analysis showed that
the T = 3 capsids fell apart during dialysis, indicating
that the stabilizing effect of the metal ions is not enough in this
case (Figure B). The T = 1 particles, however, could be stabilized by Ni2+: capsids were still present after dialysis to the reaction
buffer (Figure C).
Transmission electron microscopy (TEM) analysis of the particles directly
after preparative SEC in pH 7.5 capsid buffer, and after stabilization
and dialysis to reaction buffer showed equally sized particles of
approximately 19.6 nm (Figure S4). When
the Ni2+ ions were left out, disassembly toward the capsid
protein dimers occurred during dialysis, as expected. We therefore
continued with the stabilized T = 1 particles for
the remaining experiments.
Figure 3
(A) Size exclusion chromatograms of SrtA reaction
mixtures after
dialysis to either pH 5.0 capsid buffer (pH-induced, pink line) or
pH 7.5 capsid buffer containing 2.0 M NaCl (salt-induced, orange line).
Capsids are observed around an elution volume of 10–13 mL,
with the T = 3 particles eluting earlier due to their
larger size. (B) DLS measurements of the T = 3 capsid
fraction shown in (A) after preparative SEC purification, after subsequent
incubation with Ni2+ ions, and after subsequent dialysis
to reaction buffer. (C) DLS measurements of the T = 1 capsid fraction shown in (A), after incubation with (solid line)
or without (dashed line) Ni2+ ions, followed by dialysis
to reaction buffer. Capsids are expected around 20–30 nm, and
dimers are expected below 10 nm.
(A) Size exclusion chromatograms of SrtA reaction
mixtures after
dialysis to either pH 5.0 capsid buffer (pH-induced, pink line) or
pH 7.5 capsid buffer containing 2.0 M NaCl (salt-induced, orange line).
Capsids are observed around an elution volume of 10–13 mL,
with the T = 3 particles eluting earlier due to their
larger size. (B) DLS measurements of the T = 3 capsid
fraction shown in (A) after preparative SEC purification, after subsequent
incubation with Ni2+ ions, and after subsequent dialysis
to reaction buffer. (C) DLS measurements of the T = 1 capsid fraction shown in (A), after incubation with (solid line)
or without (dashed line) Ni2+ ions, followed by dialysis
to reaction buffer. Capsids are expected around 20–30 nm, and
dimers are expected below 10 nm.After having developed a successful protocol for the formation
and stabilization of G-ELP-CCMV T = 1 capsids after
the coupling reaction with T4L-LPETG, the lysozyme encapsulation efficiency
was determined. To this end, the composition of the isolated capsid
fraction was analyzed by SDS-PAGE (Figure A). As a control, capsids were prepared from
reaction mixtures lacking either SrtA or T4L-LPETG. A band corresponding
to G-ELP-CCMV was observed for all three capsid samples. As expected,
the coupled product T4L-ELP-CCMV was only observed when both SrtA
and T4L-LPETG had been present during the coupling reaction. ImageJ
analysis of this gel suggested that each T = 1 capsid
contained approximately 4 T4L enzymes. This is quite a remarkable
amount of enzymes to fit in such a small compartment, taking into
account that lysozyme has a cationic surface charge.
Figure 4
SDS-PAGE analysis of
isolated capsid fractions after the SrtA-mediated
coupling of T4L-LPETG to G-ELP-CCMV. (A) Left: comparison between
capsids prepared from reaction mixtures containing both SrtA and T4L-LPETG
(++), no SrtA (−SrtA), and no T4L-LPETG (−T4L). Right:
calibration curve of G-ELP-CCMV. Protein bands were visualized by
Coomassie blue staining. (B) Calibration curve of the peak area observed
on SDS-PAGE, related to the amount of G-ELP-CCMV in μg. The
calibration curve was constructed based on the SDS-PAGE results shown
in (A).
SDS-PAGE analysis of
isolated capsid fractions after the SrtA-mediated
coupling of T4L-LPETG to G-ELP-CCMV. (A) Left: comparison between
capsids prepared from reaction mixtures containing both SrtA and T4L-LPETG
(++), no SrtA (−SrtA), and no T4L-LPETG (−T4L). Right:
calibration curve of G-ELP-CCMV. Protein bands were visualized by
Coomassie blue staining. (B) Calibration curve of the peak area observed
on SDS-PAGE, related to the amount of G-ELP-CCMV in μg. The
calibration curve was constructed based on the SDS-PAGE results shown
in (A).To investigate the enzymatic activity
of T4L after encapsulation
in the capsids, the capsids in the reaction buffer were exposed to M. luteus cell walls, labeled with fluorophores of
which the fluorescence was self-quenched (Figure ). Also dimers, obtained from the procedure
where the Ni2+ ions had been left out before dialysis to
reaction buffer, were added to the M. luteus substrate. As a control, samples were prepared from SrtA reaction
mixtures deficient of either SrtA or T4L-LPETG. The T4L-LPETG concentration
in the active capsid and dimer samples was determined based on the
ratio of T4L-ELP-CCMV and G-ELP-CCMV, determined by SDS-PAGE analysis
(Figure A) and comparison
to a calibration curve of G-ELP-CCMV (Figure B). Only when both SrtA and T4L-LPETG had
been present during the reaction, a fluorescence increase was observed.
This showed that the cargo was available to react with the substrate
after encapsulation, as shown previously when CalB was encapsulated
using a similar strategy.[24] Free T4L-LPETG,
in the same concentration as present in the active capsid and dimer
samples, was more active (i.e., approximately seven times) than T4L-LPETG
attached to G-ELP-CCMV (Figure ). Additionally, free T4L-LPETG, subjected to the same protocol,
but without SrtA and G-ELP-CCMV present, was equally active as T4L-LPETG
that had not been subjected to this protocol (Figure S5). Hence, attachment of ELP-CCMV did affect lysozyme
activity to some extent. Attempts to disassemble the metal ion-stabilized
capsids into capsids by the addition of an excess of chelating agent
ethylenediaminetetraacetic acid (EDTA) failed. Probably, the crowded
interior of the loaded capsids did not allow EDTA to reach the metal
ions near the hexahistidine tags.
Figure 5
Catalytic activity of capsids where both
SrtA and T4L-LPETG had
been present during the SrtA reaction (++) or where either SrtA or
T4L-LPETG had been left out (−SrtA and −T4L-LPETG, respectively).
The activity was measured using the EnzChek lysozyme assay. +Ni2+: nickel ions were added before dialysis to reaction buffer,
to stabilize the capsids; −Ni2+: nickel ions were
not added before dialysis to reaction buffer, yielding dimers. The
activity of the ++ samples was compared to the activity of nonencapsulated
T4L-LPETG, in approximately the same concentration as the capsid samples.
As a control, the background reaction in reaction buffer was measured.
Catalytic activity of capsids where both
SrtA and T4L-LPETG had
been present during the SrtA reaction (++) or where either SrtA or
T4L-LPETG had been left out (−SrtA and −T4L-LPETG, respectively).
The activity was measured using the EnzChek lysozyme assay. +Ni2+: nickel ions were added before dialysis to reaction buffer,
to stabilize the capsids; −Ni2+: nickel ions were
not added before dialysis to reaction buffer, yielding dimers. The
activity of the ++ samples was compared to the activity of nonencapsulated
T4L-LPETG, in approximately the same concentration as the capsid samples.
As a control, the background reaction in reaction buffer was measured.Surprisingly, the activities of
the T4L-modified dimers and capsids
were very similar (Figure ). Even if the M. luteus cells
had been fragmented during lyophilization, resulting in cell wall
fragments which could more easily come into contact with enzyme molecules,
we would still expect to see a difference in activity, that is, some
effect of diffusion through the pores of the T =
1 capsids. To be sure that the addition of the substrate did not result
in capsid disassembly, DLS measurements were performed on the capsids
before and after substrate addition (Figure S6). No signs of capsid disassembly were observed, suggesting that
the capsids remained intact during the activity assay. We could also
rule out aspecific adhesion of free T4L-LPETG to the outside of the
capsids, as no free T4L-LPETG was observed on the SDS-PAGE gels after
capsid purification (Figure A). Lastly, the effect of G-ELP-CCMV itself on T4L activity
was investigated by incubating free T4L-LPETG with free G-ELP-CCMV,
followed by a measurement of the lysozyme activity (Figure S7). No effect of the presence of G-ELP-CCMV was observed
on the T4L activity. This excludes any effects arising from aspecific
ionic interactions between lysozyme and the CCMV capsid protein. From
the experiments above, we can conclude that the T4L enzyme molecules
retain their activity after encapsulation inside the CCMV capsids
and that their activity is somewhat reduced compared to free T4L.
Conclusion
We have utilized a protein-based block copolymer of CCMV and its
expanded assembly profile to create nanoreactors which can function
under conditions with similar salt concentrations as present in the
physiological environment. As a proof-of-principle, T4 lysozyme was
successfully encapsulated via selective attachment to the interior
of the CCMV capsids. The activity of this enzyme is highly dependent
on the salt concentration and pH of the environment. Only after addition
of metal ions to the CCMV capsids, these could remain stable at conditions
at which its cargo was also active. A high encapsulation efficiency
of approximately 4 enzymes per T = 1 capsid was achieved,
indicating that the unfavorable interaction between the cationic lysozyme
molecules was overcome. Possibly these charges were neutralized by
interactions with the interior of the capsids. It was shown that on
incorporation in the CCMV capsids, the enzyme molecules were available
to interact with the substrate and remained active. This opens perspectives
to use the shielded T4L in antibiotic applications. Attempts to disassemble
the capsids by the addition of EDTA, which should bind the metal ions,
have not been successful so far. Future research could focus on methods
to disassemble these capsids, and expansion of the assembly/disassembly
cycle toward a switchable nanoreactor. Furthermore, we believe this
strategy is widely applicable to different types of cargo, and provides
interesting opportunities for the in vitro and possible in vivo application
of the CCMV capsids.
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