Literature DB >> 28629775

8-Oxo-7,8-dihydroguanine, friend and foe: Epigenetic-like regulator versus initiator of mutagenesis.

Aaron M Fleming1, Cynthia J Burrows2.   

Abstract

A high flux of reactive oxygen species during oxidative stress results in oxidative modification of cellular components including DNA. Oxidative DNA "damage" to the heterocyclic bases is considered deleterious because polymerases may incorrectly read the modifications causing mutations. A prominent member in this class is the oxidized guanine base 8-oxo-7,8-dihydroguanine (OG) that is moderately mutagenic effecting G→T transversion mutations. Recent reports have identified that formation of OG in G-rich regulatory elements in the promoters of the VEGF, TNFα, and SIRT1 genes can increase transcription via activation of the base excision repair (BER) pathway. Work in our laboratory with the G-rich sequence in the promoter of VEGF concluded that BER drives a shift in structure to a G-quadruplex conformation leading to gene activation in mammalian cells. More specifically, removal of OG from the duplex context by 8-oxoguanine glycosylase 1 (OGG1) produces an abasic site (AP) that destabilizes the duplex, shifting the equilibrium toward the G-quadruplex fold because of preferential extrusion of the AP into a loop. The AP is bound but inefficiently cleaved by apurinic/apyrimidinic endoDNase I (APE1) that likely allows recruitment of activating transcription factors for gene induction. The ability of OG to induce transcription ascribes a regulatory or epigenetic-like role for this oxidatively modified base. We compare OG to the 5-methylcytosine (5mC) epigenetic pathway including its oxidized derivatives, some of which poise genes for transcription while also being substrates for BER. The mutagenic potential of OG to induce only ∼one-third the number of mutations (G→T) compared to deamination of 5mC producing C→T mutations is described. These comparisons blur the line between friendly epigenetic base modifications and those that are foes, i.e. DNA "damage," causing genetic mutations.
Copyright © 2017 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  8-Oxo-7,8-dihydroguanine; Base excision repair; Epigenetics; G-quadruplex; Mutagenesis; Oxidative stress

Mesh:

Substances:

Year:  2017        PMID: 28629775      PMCID: PMC5548303          DOI: 10.1016/j.dnarep.2017.06.009

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  65 in total

Review 1.  Base-excision repair of oxidative DNA damage.

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2.  N6-methyladenine DNA modification in Drosophila.

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Journal:  Cell       Date:  2015-04-30       Impact factor: 41.582

3.  Sequencing the Mouse Genome for the Oxidatively Modified Base 8-Oxo-7,8-dihydroguanine by OG-Seq.

Authors:  Yun Ding; Aaron M Fleming; Cynthia J Burrows
Journal:  J Am Chem Soc       Date:  2017-02-13       Impact factor: 15.419

4.  Inherited variants of MYH associated with somatic G:C-->T:A mutations in colorectal tumors.

Authors:  Nada Al-Tassan; Nikolas H Chmiel; Julie Maynard; Nick Fleming; Alison L Livingston; Geraint T Williams; Angela K Hodges; D Rhodri Davies; Sheila S David; Julian R Sampson; Jeremy P Cheadle
Journal:  Nat Genet       Date:  2002-01-30       Impact factor: 38.330

5.  Oxidized guanine lesions as modulators of gene transcription. Altered p50 binding affinity and repair shielding by 7,8-dihydro-8-oxo-2'-deoxyguanosine lesions in the NF-kappaB promoter element.

Authors:  M Katie Hailer-Morrison; J Michelle Kotler; Brooke D Martin; Kent D Sugden
Journal:  Biochemistry       Date:  2003-08-19       Impact factor: 3.162

Review 6.  Transcriptional regulatory functions of mammalian AP-endonuclease (APE1/Ref-1), an essential multifunctional protein.

Authors:  Kishor K Bhakat; Anil K Mantha; Sankar Mitra
Journal:  Antioxid Redox Signal       Date:  2009-03       Impact factor: 8.401

7.  Formation of 13C-, 15N-, and 18O-labeled guanidinohydantoin from guanosine oxidation with singlet oxygen. Implications for structure and mechanism.

Authors:  Yu Ye; James G Muller; Wenchen Luo; Charles L Mayne; Anthony J Shallop; Roger A Jones; Cynthia J Burrows
Journal:  J Am Chem Soc       Date:  2003-11-19       Impact factor: 15.419

Review 8.  Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?

Authors:  Shankar Balasubramanian; Laurence H Hurley; Stephen Neidle
Journal:  Nat Rev Drug Discov       Date:  2011-04       Impact factor: 84.694

9.  Solution structure of the major G-quadruplex formed in the human VEGF promoter in K+: insights into loop interactions of the parallel G-quadruplexes.

Authors:  Prashansa Agrawal; Emmanuel Hatzakis; Kexiao Guo; Megan Carver; Danzhou Yang
Journal:  Nucleic Acids Res       Date:  2013-09-04       Impact factor: 16.971

10.  Intramolecularly folded G-quadruplex and i-motif structures in the proximal promoter of the vascular endothelial growth factor gene.

Authors:  Kexiao Guo; Vijay Gokhale; Laurence H Hurley; Daekyu Sun
Journal:  Nucleic Acids Res       Date:  2008-07-09       Impact factor: 16.971

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  40 in total

1.  Comprehensive analysis of the correlation between base-excision repair gene SNPs and esophageal squamous cell carcinoma risk in a Chinese Han population.

Authors:  Yu Pu; Liang Zhao; Nan Dai; Mingfang Xu
Journal:  Mol Clin Oncol       Date:  2020-06-09

2.  The RAD17 Promoter Sequence Contains a Potential Tail-Dependent G-Quadruplex That Downregulates Gene Expression upon Oxidative Modification.

Authors:  Judy Zhu; Aaron M Fleming; Cynthia J Burrows
Journal:  ACS Chem Biol       Date:  2018-08-15       Impact factor: 5.100

Review 3.  In What Ways Do Synthetic Nucleotides and Natural Base Lesions Alter the Structural Stability of G-Quadruplex Nucleic Acids?

Authors:  Janos Sagi
Journal:  J Nucleic Acids       Date:  2017-10-18

4.  Human DNA Repair Genes Possess Potential G-Quadruplex Sequences in Their Promoters and 5'-Untranslated Regions.

Authors:  Aaron M Fleming; Judy Zhu; Yun Ding; Joshua A Visser; Julia Zhu; Cynthia J Burrows
Journal:  Biochemistry       Date:  2018-01-24       Impact factor: 3.162

5.  Interplay of Guanine Oxidation and G-Quadruplex Folding in Gene Promoters.

Authors:  Aaron M Fleming; Cynthia J Burrows
Journal:  J Am Chem Soc       Date:  2020-01-09       Impact factor: 15.419

6.  Oxidative Modification of Guanine in a Potential Z-DNA-Forming Sequence of a Gene Promoter Impacts Gene Expression.

Authors:  Aaron M Fleming; Judy Zhu; Yun Ding; Selma Esders; Cynthia J Burrows
Journal:  Chem Res Toxicol       Date:  2019-03-07       Impact factor: 3.739

7.  8-Oxo-7,8-dihydro-2'-deoxyguanosine and abasic site tandem lesions are oxidation prone yielding hydantoin products that strongly destabilize duplex DNA.

Authors:  Aaron M Fleming; Cynthia J Burrows
Journal:  Org Biomol Chem       Date:  2017-10-11       Impact factor: 3.876

8.  Oxidative Modification of the Potential G-Quadruplex Sequence in the PCNA Gene Promoter Can Turn on Transcription.

Authors:  Samuel C J Redstone; Aaron M Fleming; Cynthia J Burrows
Journal:  Chem Res Toxicol       Date:  2019-01-14       Impact factor: 3.739

9.  2'-Fluorinated Hydantoins as Chemical Biology Tools for Base Excision Repair Glycosylases.

Authors:  Sheng Cao; JohnPatrick Rogers; Jongchan Yeo; Brittany Anderson-Steele; Jonathan Ashby; Sheila S David
Journal:  ACS Chem Biol       Date:  2020-03-13       Impact factor: 5.100

Review 10.  DNA Damage and Associated DNA Repair Defects in Disease and Premature Aging.

Authors:  Vinod Tiwari; David M Wilson
Journal:  Am J Hum Genet       Date:  2019-08-01       Impact factor: 11.025

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