Literature DB >> 286293

Aliphatic groups of sperm whale myoglobin: 13C NMR study.

R J Wittebort, T M Rothgeb, A Szabo, F R Gurd.   

Abstract

The aliphatic region of the 13C NMR spectrum of sperm whale cyanoferrimyoglobin has been examined at 67.9 MHz. Fifty partially resolved or well-resolved resonances, representing at least half of the aliphatic carbons in the molecule, are observed in the spectral region from 9 to 29 ppm downfield of tetramethylsilane. Analyses of the spin lattice relaxation times (T1) and nuclear Overhauser enhancements for these resonances reveal considerable motion freedom of the aliphatic side chains. In the spectral region from 9 to 15 ppm, eight single carbon resonances are observed and tentatively assigned to Cdelta 1 of eight of the nine isoleucine residues. In at least five cases the reorientational motion of the isoleucine side chains could not be characterized solely by rotation of the Cdelta 1 methyl groups. The simplest model consistent with the data is a restricted diffusion model with two degrees of internal rotation [Wittenbort, R. J. & Szabo, A. (1978) J. Chem. Phys. 69, 1722--1736]. In light of the packing densities within the myoglobin molecule these results are taken to imply concerted motions of the buried aliphatic residues.

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Year:  1979        PMID: 286293      PMCID: PMC383188          DOI: 10.1073/pnas.76.3.1059

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

1.  13C nuclear magnetic resonance study of molecular motions and conformational transitions in muscle calcium binding parvalbumins.

Authors:  D J Nelson; S J Opella; O Jardetzky
Journal:  Biochemistry       Date:  1976-12-14       Impact factor: 3.162

2.  Determination of rotational correlation times of proteins in solution from carbon-13 spin-lattice relaxation measurements. Effect of magnetic field strength and anisotropic rotation.

Authors:  D J Wilbur; R S Norton; A O Clouse; R Addleman; A Allerhand
Journal:  J Am Chem Soc       Date:  1976-12-08       Impact factor: 15.419

3.  High-field 13C nuclear magnetic resonance studies at 90.5 MHz of the basic pancreatic trypsin inhibitor.

Authors:  R Richarz; K Wüthrich
Journal:  Biochemistry       Date:  1978-06-13       Impact factor: 3.162

4.  Dynamics of folded proteins.

Authors:  J A McCammon; B R Gelin; M Karplus
Journal:  Nature       Date:  1977-06-16       Impact factor: 49.962

5.  Conformational states of bovine pancreatic ribonuclease A observed by normal and partially relaxed carbon 13 nuclear magnetic resonance.

Authors:  V Glushko; P J Lawson; F R Gurd
Journal:  J Biol Chem       Date:  1972-05-25       Impact factor: 5.157

6.  Solvent accessibility calculations for sperm whale ferrimyoglobin based on refined crystallographic data.

Authors:  J B Matthew; G I Hanania; F R Gurd
Journal:  Biochem Biophys Res Commun       Date:  1978-03-30       Impact factor: 3.575

7.  Structure of myoglobin refined at 2-0 A resolution. II. Structure of deoxymyoglobin from sperm whale.

Authors:  T Takano
Journal:  J Mol Biol       Date:  1977-03-05       Impact factor: 5.469

8.  Studies of proteins in solution by natural-abundance carbon-13 nuclear magnetic resonance. Spectral resolution and relaxation behavior at high magnetic field strengths.

Authors:  R S Norton; A O Clouse; R Addleman; A Allerhand
Journal:  J Am Chem Soc       Date:  1977-01-05       Impact factor: 15.419

9.  Packing of alpha-helices: geometrical constraints and contact areas.

Authors:  T J Richmond; F M Richards
Journal:  J Mol Biol       Date:  1978-03-15       Impact factor: 5.469

10.  Nuclear magnetic resonance studies of sperm whale myoglobin specifically enriched with 13C in the methionine methyl groups.

Authors:  W C Jones; T M Rothgeb; F R Gurd
Journal:  J Biol Chem       Date:  1976-12-10       Impact factor: 5.157

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  8 in total

Review 1.  NMR studies of dynamic biomolecular conformational ensembles.

Authors:  Dennis A Torchia
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2014-11-28       Impact factor: 9.795

2.  Molecular dynamics of myoglobin at 298 degrees K. Results from a 300-ps computer simulation.

Authors:  R M Levy; R P Sheridan; J W Keepers; G S Dubey; S Swaminathan; M Karplus
Journal:  Biophys J       Date:  1985-09       Impact factor: 4.033

3.  Dipolar NMR relaxation of nonprotonated aromatic carbons in proteins. Structural and dynamical effects.

Authors:  R M Levy; C M Dobson; M Karplus
Journal:  Biophys J       Date:  1982-07       Impact factor: 4.033

4.  Resonance Raman detection of structural dynamics at the active site in hemoglobin.

Authors:  M R Ondrias; D L Rousseau; S R Simon
Journal:  Proc Natl Acad Sci U S A       Date:  1982-03       Impact factor: 11.205

5.  Structural dynamics of liganded myoglobin.

Authors:  H Frauenfelder; G A Petsko
Journal:  Biophys J       Date:  1980-10       Impact factor: 4.033

6.  Electrostatic stabilization in sperm whale and harbor seal myoglobins. Identification of groups primarily responsible for changes in anchoring of the A helix.

Authors:  F R Gurd; S H Friend; T M Rothgeb; R S Gurd; H Scouloudi
Journal:  Biophys J       Date:  1980-10       Impact factor: 4.033

7.  Evolution of the amino acid substitution in the mammalian myoglobin gene.

Authors:  R A Bogardt; B N Jones; F E Dwulet; W H Garner; L D Lehman; F R Gurd
Journal:  J Mol Evol       Date:  1980-07       Impact factor: 2.395

8.  A sharp thermal transition of fast aromatic-ring dynamics in ubiquitin.

Authors:  Vignesh Kasinath; Yinan Fu; Kim A Sharp; A Joshua Wand
Journal:  Angew Chem Int Ed Engl       Date:  2014-12-04       Impact factor: 15.336

  8 in total

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