Literature DB >> 28623730

Quantitative microscopy based on single-molecule fluorescence.

Seung-Ryoung Jung1, Bryant S Fujimoto1, Daniel T Chiu2.   

Abstract

Quantitative microscopy is needed to understand reactions or phenomena carried out by biological molecules such as enzymes, receptors, and membrane-localized proteins. Counting the biomolecules of interest in single organelles or cellular compartments is critical in these approaches. In this brief perspective, we focus on the development of quantitative fluorescence microscopies that measure the precise copy numbers of proteins in cellular organelles or purified samples. We introduce recent improvements in quantitative microscopies to overcome undercounting or overcounting errors in certain conditions. We conclude by discussing biological applications.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 28623730      PMCID: PMC5654590          DOI: 10.1016/j.cbpa.2017.06.004

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  48 in total

1.  Automated Analysis of Single-Molecule Photobleaching Data by Statistical Modeling of Spot Populations.

Authors:  Clarissa Liesche; Kristin S Grussmayer; Michael Ludwig; Stefan Wörz; Karl Rohr; Dirk-Peter Herten; Joël Beaudouin; Roland Eils
Journal:  Biophys J       Date:  2015-12-01       Impact factor: 4.033

2.  A single-molecule method for the quantitation of microRNA gene expression.

Authors:  Lori A Neely; Sonal Patel; Joanne Garver; Michael Gallo; Maria Hackett; Stephen McLaughlin; Mark Nadel; John Harris; Steve Gullans; Jenny Rooke
Journal:  Nat Methods       Date:  2006-01       Impact factor: 28.547

3.  Counting low-copy number proteins in a single cell.

Authors:  Bo Huang; Hongkai Wu; Devaki Bhaya; Arthur Grossman; Sebastien Granier; Brian K Kobilka; Richard N Zare
Journal:  Science       Date:  2007-01-05       Impact factor: 47.728

4.  Stoichiometry and turnover in single, functioning membrane protein complexes.

Authors:  Mark C Leake; Jennifer H Chandler; George H Wadhams; Fan Bai; Richard M Berry; Judith P Armitage
Journal:  Nature       Date:  2006-09-13       Impact factor: 49.962

5.  Subunit counting in membrane-bound proteins.

Authors:  Maximilian H Ulbrich; Ehud Y Isacoff
Journal:  Nat Methods       Date:  2007-03-18       Impact factor: 28.547

Review 6.  Single-molecule localization microscopy-near-molecular spatial resolution in light microscopy with photoswitchable fluorophores.

Authors:  Alexandre Fürstenberg; Mike Heilemann
Journal:  Phys Chem Chem Phys       Date:  2013-09-28       Impact factor: 3.676

7.  Identification of clustering artifacts in photoactivated localization microscopy.

Authors:  Paolo Annibale; Stefano Vanni; Marco Scarselli; Ursula Rothlisberger; Aleksandra Radenovic
Journal:  Nat Methods       Date:  2011-06-12       Impact factor: 28.547

8.  Highly luminescent, fluorinated semiconducting polymer dots for cellular imaging and analysis.

Authors:  Yong Zhang; Jiangbo Yu; Maria Elena Gallina; Wei Sun; Yu Rong; Daniel T Chiu
Journal:  Chem Commun (Camb)       Date:  2013-09-25       Impact factor: 6.222

9.  Counting molecules in single organelles with superresolution microscopy allows tracking of the endosome maturation trajectory.

Authors:  Elias M Puchner; Jessica M Walter; Robert Kasper; Bo Huang; Wendell A Lim
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

10.  Quantitative localization microscopy: effects of photophysics and labeling stoichiometry.

Authors:  Robert P J Nieuwenhuizen; Mark Bates; Anna Szymborska; Keith A Lidke; Bernd Rieger; Sjoerd Stallinga
Journal:  PLoS One       Date:  2015-05-20       Impact factor: 3.240

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  5 in total

Review 1.  Single-molecule counting applied to the study of GPCR oligomerization.

Authors:  Joshua N Milstein; Daniel F Nino; Xiaohan Zhou; Claudiu C Gradinaru
Journal:  Biophys J       Date:  2022-08-03       Impact factor: 3.699

Review 2.  The emergence of phase separation as an organizing principle in bacteria.

Authors:  Christopher A Azaldegui; Anthony G Vecchiarelli; Julie S Biteen
Journal:  Biophys J       Date:  2020-09-28       Impact factor: 4.033

3.  Combining Primed Photoconversion and UV-Photoactivation for Aberration-Free, Live-Cell Compliant Multi-Color Single-Molecule Localization Microscopy Imaging.

Authors:  David Virant; Bartosz Turkowyd; Alexander Balinovic; Ulrike Endesfelder
Journal:  Int J Mol Sci       Date:  2017-07-14       Impact factor: 5.923

4.  A stochastic view on surface inhomogeneity of nanoparticles.

Authors:  R A J Post; D van der Zwaag; G Bet; S P W Wijnands; L Albertazzi; E W Meijer; R W van der Hofstad
Journal:  Nat Commun       Date:  2019-04-10       Impact factor: 14.919

5.  Diffraction-Limited Molecular Cluster Quantification with Bayesian Nonparametrics.

Authors:  J Shepard Bryan; Ioannis Sgouralis; Steve Pressé
Journal:  Nat Comput Sci       Date:  2022-02-28
  5 in total

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