Literature DB >> 28613873

The Drug-Resistant Variant P167S Expands the Substrate Profile of CTX-M β-Lactamases for Oxyimino-Cephalosporin Antibiotics by Enlarging the Active Site upon Acylation.

Meha P Patel, Liya Hu, Vlatko Stojanoski, Banumathi Sankaran1, B V Venkataram Prasad, Timothy Palzkill.   

Abstract

CTX-M β-lactamases provide resistance against the β-lactam antibiotic, cefotaxime, but not a related antibiotic, ceftazidime. β-Lactamases that carry the P167S substitution, however, provide ceftazidime resistance. In this study, CTX-M-14 was used as a model to study the structural changes caused by the P167S mutation that accelerate ceftazidime turnover. X-ray crystallography was used to determine the structures of the P167S apoenzyme along with the structures of the S70G/P167S, E166A/P167S, and E166A mutant enzymes complexed with ceftazidime as well as the E166A/P167S apoenzyme. The S70G and E166A mutations allow capture of the enzyme-substrate complex and the acylated form of ceftazidime, respectively. The results showed a large conformational change in the Ω-loop of the ceftazidime acyl-enzyme complex of the P167S mutant but not in the enzyme-substrate complex, suggesting the change occurs upon acylation. The change results in a larger active site that prevents steric clash between the aminothiazole ring of ceftazidime and the Asn170 residue in the Ω-loop, allowing accommodation of ceftazidime for hydrolysis. In addition, the conformational change was not observed in the E166A/P167S apoenzyme, suggesting the presence of acylated ceftazidime influences the conformational change. Finally, the E166A acyl-enzyme structure with ceftazidime did not exhibit the altered conformation, indicating the P167S substitution is required for the change. Taken together, the results reveal that the P167S substitution and the presence of acylated ceftazidime both drive the structure toward a conformational change in the Ω-loop and that in CTX-M P167S enzymes found in drug-resistant bacteria this will lead to an increased level of ceftazidime hydrolysis.

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Year:  2017        PMID: 28613873      PMCID: PMC5645026          DOI: 10.1021/acs.biochem.7b00176

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  46 in total

Review 1.  Resistance to cephalosporins and carbapenems in Gram-negative bacterial pathogens.

Authors:  Yvonne Pfeifer; Angela Cullik; Wolfgang Witte
Journal:  Int J Med Microbiol       Date:  2010-05-27       Impact factor: 3.473

2.  Experimental prediction of the evolution of ceftazidime resistance in the CTX-M-2 extended-spectrum beta-lactamase.

Authors:  Kerry J Welsh; Miriam Barlow; Fred C Tenover; James W Biddle; J Kamile Rasheed; Leigh Ann Clark; John E McGowan
Journal:  Antimicrob Agents Chemother       Date:  2005-03       Impact factor: 5.191

3.  Predictive analysis of ceftazidime hydrolysis in CTX-M-type beta-lactamase family members with a mutational substitution at position 167.

Authors:  Soichiro Kimura; Yoshikazu Ishii; Kazuhiro Tateda; Keizo Yamaguchi
Journal:  Int J Antimicrob Agents       Date:  2007-01-26       Impact factor: 5.283

4.  Structures of ceftazidime and its transition-state analogue in complex with AmpC beta-lactamase: implications for resistance mutations and inhibitor design.

Authors:  R A Powers; E Caselli; P J Focia; F Prati; B K Shoichet
Journal:  Biochemistry       Date:  2001-08-07       Impact factor: 3.162

5.  A triple mutant in the Ω-loop of TEM-1 β-lactamase changes the substrate profile via a large conformational change and an altered general base for catalysis.

Authors:  Vlatko Stojanoski; Dar-Chone Chow; Liya Hu; Banumathi Sankaran; Hiram F Gilbert; B V Venkataram Prasad; Timothy Palzkill
Journal:  J Biol Chem       Date:  2015-02-20       Impact factor: 5.157

6.  Acyl-intermediate structures of the extended-spectrum class A beta-lactamase, Toho-1, in complex with cefotaxime, cephalothin, and benzylpenicillin.

Authors:  Tatsuro Shimamura; Akiko Ibuka; Shinya Fushinobu; Takayoshi Wakagi; Masaji Ishiguro; Yoshikazu Ishii; Hiroshi Matsuzawa
Journal:  J Biol Chem       Date:  2002-09-08       Impact factor: 5.157

7.  Genetic and structural characterization of an L201P global suppressor substitution in TEM-1 beta-lactamase.

Authors:  David C Marciano; Jeanine M Pennington; Xiaohu Wang; Jian Wang; Yu Chen; Veena L Thomas; Brian K Shoichet; Timothy Palzkill
Journal:  J Mol Biol       Date:  2008-09-16       Impact factor: 5.469

8.  Crystal structure of the E166A mutant of extended-spectrum beta-lactamase Toho-1 at 1.8 A resolution.

Authors:  A Ibuka; A Taguchi; M Ishiguro; S Fushinobu; Y Ishii; S Kamitori; K Okuyama; K Yamaguchi; M Konno; H Matsuzawa
Journal:  J Mol Biol       Date:  1999-02-05       Impact factor: 5.469

9.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  Molecular basis for the catalytic specificity of the CTX-M extended-spectrum β-lactamases.

Authors:  Carolyn J Adamski; Ana Maria Cardenas; Nicholas G Brown; Lori B Horton; Banumathi Sankaran; B V Venkataram Prasad; Hiram F Gilbert; Timothy Palzkill
Journal:  Biochemistry       Date:  2014-12-24       Impact factor: 3.162

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  15 in total

1.  Synergistic effects of functionally distinct substitutions in β-lactamase variants shed light on the evolution of bacterial drug resistance.

Authors:  Meha P Patel; Liya Hu; Cameron A Brown; Zhizeng Sun; Carolyn J Adamski; Vlatko Stojanoski; Banumathi Sankaran; B V Venkataram Prasad; Timothy Palzkill
Journal:  J Biol Chem       Date:  2018-10-01       Impact factor: 5.157

2.  Antagonism between substitutions in β-lactamase explains a path not taken in the evolution of bacterial drug resistance.

Authors:  Cameron A Brown; Liya Hu; Zhizeng Sun; Meha P Patel; Sukrit Singh; Justin R Porter; Banumathi Sankaran; B V Venkataram Prasad; Gregory R Bowman; Timothy Palzkill
Journal:  J Biol Chem       Date:  2020-04-16       Impact factor: 5.157

3.  Penicillanic Acid Sulfones Inactivate the Extended-Spectrum β-Lactamase CTX-M-15 through Formation of a Serine-Lysine Cross-Link: an Alternative Mechanism of β-Lactamase Inhibition.

Authors:  Philip Hinchliffe; Catherine L Tooke; Christopher R Bethel; Benlian Wang; Christopher Arthur; Kate J Heesom; Stuart Shapiro; Daniela M Schlatzer; Krisztina M Papp-Wallace; Robert A Bonomo; James Spencer
Journal:  mBio       Date:  2022-05-25       Impact factor: 7.786

Review 4.  β-Lactam antibiotic targets and resistance mechanisms: from covalent inhibitors to substrates.

Authors:  Montserrat Mora-Ochomogo; Christopher T Lohans
Journal:  RSC Med Chem       Date:  2021-08-04

5.  Clinical Variants of New Delhi Metallo-β-Lactamase Are Evolving To Overcome Zinc Scarcity.

Authors:  Alesha C Stewart; Christopher R Bethel; Jamie VanPelt; Alex Bergstrom; Zishuo Cheng; Callie G Miller; Cameron Williams; Robert Poth; Matthew Morris; Olivia Lahey; Jay C Nix; David L Tierney; Richard C Page; Michael W Crowder; Robert A Bonomo; Walter Fast
Journal:  ACS Infect Dis       Date:  2017-10-11       Impact factor: 5.084

6.  Local Interactions with the Glu166 Base and the Conformation of an Active Site Loop Play Key Roles in Carbapenem Hydrolysis by the KPC-2 β-lactamase.

Authors:  Ian M Furey; Shrenik C Mehta; Banumathi Sankaran; Liya Hu; B V Venkataram Prasad; Timothy Palzkill
Journal:  J Biol Chem       Date:  2021-05-19       Impact factor: 5.157

7.  Toho-1 β-lactamase: backbone chemical shift assignments and changes in dynamics upon binding with avibactam.

Authors:  Varun V Sakhrani; Rittik K Ghosh; Eduardo Hilario; Kevin L Weiss; Leighton Coates; Leonard J Mueller
Journal:  J Biomol NMR       Date:  2021-07-04       Impact factor: 2.582

Review 8.  Structural and Mechanistic Basis for Extended-Spectrum Drug-Resistance Mutations in Altering the Specificity of TEM, CTX-M, and KPC β-lactamases.

Authors:  Timothy Palzkill
Journal:  Front Mol Biosci       Date:  2018-02-23

9.  Megahertz serial crystallography.

Authors:  Max O Wiedorn; Dominik Oberthür; Richard Bean; Robin Schubert; Nadine Werner; Brian Abbey; Martin Aepfelbacher; Luigi Adriano; Aschkan Allahgholi; Nasser Al-Qudami; Jakob Andreasson; Steve Aplin; Salah Awel; Kartik Ayyer; Saša Bajt; Imrich Barák; Sadia Bari; Johan Bielecki; Sabine Botha; Djelloul Boukhelef; Wolfgang Brehm; Sandor Brockhauser; Igor Cheviakov; Matthew A Coleman; Francisco Cruz-Mazo; Cyril Danilevski; Connie Darmanin; R Bruce Doak; Martin Domaracky; Katerina Dörner; Yang Du; Hans Fangohr; Holger Fleckenstein; Matthias Frank; Petra Fromme; Alfonso M Gañán-Calvo; Yaroslav Gevorkov; Klaus Giewekemeyer; Helen Mary Ginn; Heinz Graafsma; Rita Graceffa; Dominic Greiffenberg; Lars Gumprecht; Peter Göttlicher; Janos Hajdu; Steffen Hauf; Michael Heymann; Susannah Holmes; Daniel A Horke; Mark S Hunter; Siegfried Imlau; Alexander Kaukher; Yoonhee Kim; Alexander Klyuev; Juraj Knoška; Bostjan Kobe; Manuela Kuhn; Christopher Kupitz; Jochen Küpper; Janine Mia Lahey-Rudolph; Torsten Laurus; Karoline Le Cong; Romain Letrun; P Lourdu Xavier; Luis Maia; Filipe R N C Maia; Valerio Mariani; Marc Messerschmidt; Markus Metz; Davide Mezza; Thomas Michelat; Grant Mills; Diana C F Monteiro; Andrew Morgan; Kerstin Mühlig; Anna Munke; Astrid Münnich; Julia Nette; Keith A Nugent; Theresa Nuguid; Allen M Orville; Suraj Pandey; Gisel Pena; Pablo Villanueva-Perez; Jennifer Poehlsen; Gianpietro Previtali; Lars Redecke; Winnie Maria Riekehr; Holger Rohde; Adam Round; Tatiana Safenreiter; Iosifina Sarrou; Tokushi Sato; Marius Schmidt; Bernd Schmitt; Robert Schönherr; Joachim Schulz; Jonas A Sellberg; M Marvin Seibert; Carolin Seuring; Megan L Shelby; Robert L Shoeman; Marcin Sikorski; Alessandro Silenzi; Claudiu A Stan; Xintian Shi; Stephan Stern; Jola Sztuk-Dambietz; Janusz Szuba; Aleksandra Tolstikova; Martin Trebbin; Ulrich Trunk; Patrik Vagovic; Thomas Ve; Britta Weinhausen; Thomas A White; Krzysztof Wrona; Chen Xu; Oleksandr Yefanov; Nadia Zatsepin; Jiaguo Zhang; Markus Perbandt; Adrian P Mancuso; Christian Betzel; Henry Chapman; Anton Barty
Journal:  Nat Commun       Date:  2018-10-02       Impact factor: 14.919

Review 10.  Molecular Mechanisms, Epidemiology, and Clinical Importance of β-Lactam Resistance in Enterobacteriaceae.

Authors:  Giulia De Angelis; Paola Del Giacomo; Brunella Posteraro; Maurizio Sanguinetti; Mario Tumbarello
Journal:  Int J Mol Sci       Date:  2020-07-18       Impact factor: 5.923

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