Literature DB >> 18822298

Genetic and structural characterization of an L201P global suppressor substitution in TEM-1 beta-lactamase.

David C Marciano1, Jeanine M Pennington, Xiaohu Wang, Jian Wang, Yu Chen, Veena L Thomas, Brian K Shoichet, Timothy Palzkill.   

Abstract

TEM-1 beta-lactamase confers bacterial resistance to penicillin antibiotics and has acquired mutations that permit the enzyme to hydrolyze extended-spectrum cephalosporins or to avoid inactivation by beta-lactamase inhibitors. However, many of these substitutions have been shown to reduce activity against penicillin antibiotics and/or result in loss of stability for the enzyme. In order to gain more information concerning the tradeoffs associated with active site substitutions, a genetic selection was used to find second site mutations that partially restore ampicillin resistance levels conferred by an R244A active site TEM-1 beta-lactamase mutant. An L201P substitution distant from the active site that enhanced ampicillin resistance levels and increased protein expression levels of the R244A TEM-1 mutant was identified. The L201P substitution also increases the ampicillin resistance levels and restores expression levels of a poorly expressed TEM-1 mutant with a core-disrupting substitution. In vitro thermal denaturation of purified protein indicated that the L201P mutation increases the T(m) value of the TEM-1 enzyme. The X-ray structure of the L201P TEM-1 mutant was determined to gain insight into the increase in enzyme stability. The proline substitution occurs at the N-terminus of an alpha-helix and may stabilize the enzyme by reducing the helix dipole, as well as by lowering the conformational entropy cost of folding due to the reduced number of conformations available in the unfolded state. Collectively, the data suggest that L201P promotes tolerance of some deleterious TEM-1 mutations by enhancing the protein stability of these mutants.

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Year:  2008        PMID: 18822298      PMCID: PMC2644635          DOI: 10.1016/j.jmb.2008.09.009

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  51 in total

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Journal:  J Mol Biol       Date:  1996-05-17       Impact factor: 5.469

2.  A natural polymorphism in beta-lactamase is a global suppressor.

Authors:  W Huang; T Palzkill
Journal:  Proc Natl Acad Sci U S A       Date:  1997-08-05       Impact factor: 11.205

Review 3.  A functional classification scheme for beta-lactamases and its correlation with molecular structure.

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Journal:  Antimicrob Agents Chemother       Date:  1995-06       Impact factor: 5.191

4.  Evolution of antibiotic resistance: several different amino acid substitutions in an active site loop alter the substrate profile of beta-lactamase.

Authors:  T Palzkill; Q Q Le; K V Venkatachalam; M LaRocco; H Ocera
Journal:  Mol Microbiol       Date:  1994-04       Impact factor: 3.501

5.  Backbone dynamics of TEM-1 determined by NMR: evidence for a highly ordered protein.

Authors:  Pierre-Yves Savard; Stéphane M Gagné
Journal:  Biochemistry       Date:  2006-09-26       Impact factor: 3.162

6.  Site-directed mutagenesis at the active site of Escherichia coli TEM-1 beta-lactamase. Suicide inhibitor-resistant mutants reveal the role of arginine 244 and methionine 69 in catalysis.

Authors:  M Delaire; R Labia; J P Samama; J M Masson
Journal:  J Biol Chem       Date:  1992-10-15       Impact factor: 5.157

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Journal:  Biochem J       Date:  1987-08-01       Impact factor: 3.857

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Journal:  J Antimicrob Chemother       Date:  1992-10       Impact factor: 5.790

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Authors:  S B Vakulenko; B Geryk; L P Kotra; S Mobashery; S A Lerner
Journal:  Antimicrob Agents Chemother       Date:  1998-07       Impact factor: 5.191

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Journal:  Antimicrob Agents Chemother       Date:  1998-06       Impact factor: 5.191

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  31 in total

Review 1.  Mutational effects and the evolution of new protein functions.

Authors:  Misha Soskine; Dan S Tawfik
Journal:  Nat Rev Genet       Date:  2010-08       Impact factor: 53.242

2.  Identification and characterization of beta-lactamase inhibitor protein-II (BLIP-II) interactions with beta-lactamases using phage display.

Authors:  N G Brown; T Palzkill
Journal:  Protein Eng Des Sel       Date:  2010-03-22       Impact factor: 1.650

3.  Mistranslation drives the evolution of robustness in TEM-1 β-lactamase.

Authors:  Sinisa Bratulic; Florian Gerber; Andreas Wagner
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-21       Impact factor: 11.205

4.  SHV-129: A Gateway to Global Suppressors in the SHV β-Lactamase Family?

Authors:  Marisa L Winkler; Robert A Bonomo
Journal:  Mol Biol Evol       Date:  2015-11-03       Impact factor: 16.240

5.  The Drug-Resistant Variant P167S Expands the Substrate Profile of CTX-M β-Lactamases for Oxyimino-Cephalosporin Antibiotics by Enlarging the Active Site upon Acylation.

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Journal:  Biochemistry       Date:  2017-06-27       Impact factor: 3.162

6.  Analysis of the plasticity of location of the Arg244 positive charge within the active site of the TEM-1 beta-lactamase.

Authors:  David C Marciano; Nicholas G Brown; Timothy Palzkill
Journal:  Protein Sci       Date:  2009-10       Impact factor: 6.725

7.  Mutant N143P reveals how Na+ activates thrombin.

Authors:  Weiling Niu; Zhiwei Chen; Leslie A Bush-Pelc; Alaji Bah; Prafull S Gandhi; Enrico Di Cera
Journal:  J Biol Chem       Date:  2009-10-21       Impact factor: 5.157

8.  Negative Epistasis and Evolvability in TEM-1 β-Lactamase--The Thin Line between an Enzyme's Conformational Freedom and Disorder.

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Journal:  J Mol Biol       Date:  2015-05-22       Impact factor: 5.469

9.  Mutagenesis of zinc ligand residue Cys221 reveals plasticity in the IMP-1 metallo-β-lactamase active site.

Authors:  Lori B Horton; Sreejesh Shanker; Rose Mikulski; Nicholas G Brown; Kevin J Phillips; Ernest Lykissa; B V Venkataram Prasad; Timothy Palzkill
Journal:  Antimicrob Agents Chemother       Date:  2012-08-20       Impact factor: 5.191

10.  Characterization of the global stabilizing substitution A77V and its role in the evolution of CTX-M β-lactamases.

Authors:  Meha P Patel; Bartlomiej G Fryszczyn; Timothy Palzkill
Journal:  Antimicrob Agents Chemother       Date:  2015-08-17       Impact factor: 5.191

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