Literature DB >> 28612956

Connecting genomic patterns of local adaptation and niche suitability in teosintes.

J A Aguirre-Liguori1, M I Tenaillon2, A Vázquez-Lobo3, B S Gaut4, J P Jaramillo-Correa1, S Montes-Hernandez5, V Souza1, L E Eguiarte1.   

Abstract

The central abundance hypothesis predicts that local adaptation is a function of the distance to the centre of a species' geographic range. To test this hypothesis, we gathered genomic diversity data from 49 populations, 646 individuals and 33,464 SNPs of two wild relatives of maize, the teosintes Zea mays ssp. parviglumis and Zea. mays. ssp. mexicana. We examined the association between the distance to their climatic and geographic centroids and the enrichment of SNPs bearing signals of adaptation. We identified candidate adaptive SNPs in each population by combining neutrality tests and cline analyses. By applying linear regression models, we found that the number of candidate SNPs is positively associated with niche suitability, while genetic diversity is reduced at the limits of the geographic distribution. Our results suggest that overall, populations located at the limit of the species' niches are adapting locally. We argue that local adaptation to this limit could initiate ecological speciation processes and facilitate adaptation to global change.
© 2017 John Wiley & Sons Ltd.

Entities:  

Keywords:  zzm321990Zea mayszzm321990; central abundance hypothesis; conditional neutrality; ecological speciation; local adaptation; niche centroid

Mesh:

Year:  2017        PMID: 28612956     DOI: 10.1111/mec.14203

Source DB:  PubMed          Journal:  Mol Ecol        ISSN: 0962-1083            Impact factor:   6.185


  12 in total

1.  Climate change is predicted to disrupt patterns of local adaptation in wild and cultivated maize.

Authors:  Jonás A Aguirre-Liguori; Santiago Ramírez-Barahona; Peter Tiffin; Luis E Eguiarte
Journal:  Proc Biol Sci       Date:  2019-07-10       Impact factor: 5.349

Review 2.  The evolutionary genomics of species' responses to climate change.

Authors:  Jonás A Aguirre-Liguori; Santiago Ramírez-Barahona; Brandon S Gaut
Journal:  Nat Ecol Evol       Date:  2021-08-09       Impact factor: 15.460

3.  Genome sequencing reveals evidence of adaptive variation in the genus Zea.

Authors:  Lu Chen; Jingyun Luo; Minliang Jin; Ning Yang; Xiangguo Liu; Yong Peng; Wenqiang Li; Alyssa Phillips; Brenda Cameron; Julio S Bernal; Rubén Rellán-Álvarez; Ruairidh J H Sawers; Qing Liu; Yuejia Yin; Xinnan Ye; Jiali Yan; Qinghua Zhang; Xiaoting Zhang; Shenshen Wu; Songtao Gui; Wenjie Wei; Yuebin Wang; Yun Luo; Chenglin Jiang; Min Deng; Min Jin; Liumei Jian; Yanhui Yu; Maolin Zhang; Xiaohong Yang; Matthew B Hufford; Alisdair R Fernie; Marilyn L Warburton; Jeffrey Ross-Ibarra; Jianbing Yan
Journal:  Nat Genet       Date:  2022-10-20       Impact factor: 41.307

4.  Genetic Resources in the "Calabaza Pipiana" Squash (Cucurbita argyrosperma) in Mexico: Genetic Diversity, Genetic Differentiation and Distribution Models.

Authors:  Guillermo Sánchez-de la Vega; Gabriela Castellanos-Morales; Niza Gámez; Helena S Hernández-Rosales; Alejandra Vázquez-Lobo; Erika Aguirre-Planter; Juan P Jaramillo-Correa; Salvador Montes-Hernández; Rafael Lira-Saade; Luis E Eguiarte
Journal:  Front Plant Sci       Date:  2018-03-29       Impact factor: 5.753

5.  Domestication Genomics of the Open-Pollinated Scarlet Runner Bean (Phaseolus coccineus L.).

Authors:  Azalea Guerra-García; Marco Suárez-Atilano; Alicia Mastretta-Yanes; Alfonso Delgado-Salinas; Daniel Piñero
Journal:  Front Plant Sci       Date:  2017-11-15       Impact factor: 5.753

6.  The relevance of gene flow with wild relatives in understanding the domestication process.

Authors:  Alejandra Moreno-Letelier; Jonás A Aguirre-Liguori; Daniel Piñero; Alejandra Vázquez-Lobo; Luis E Eguiarte
Journal:  R Soc Open Sci       Date:  2020-04-15       Impact factor: 2.963

7.  The combined use of raw and phylogenetically independent methods of outlier detection uncovers genome-wide dynamics of local adaptation in a lizard.

Authors:  Alejandro Llanos-Garrido; Javier Pérez-Tris; José A Díaz
Journal:  Ecol Evol       Date:  2019-11-22       Impact factor: 2.912

Review 8.  Tapping Diversity From the Wild: From Sampling to Implementation.

Authors:  Sariel Hübner; Michael B Kantar
Journal:  Front Plant Sci       Date:  2021-01-27       Impact factor: 5.753

9.  Common gardens in teosintes reveal the establishment of a syndrome of adaptation to altitude.

Authors:  Margaux-Alison Fustier; Natalia E Martínez-Ainsworth; Jonás A Aguirre-Liguori; Anthony Venon; Hélène Corti; Agnès Rousselet; Fabrice Dumas; Hannes Dittberner; María G Camarena; Daniel Grimanelli; Otso Ovaskainen; Matthieu Falque; Laurence Moreau; Juliette de Meaux; Salvador Montes-Hernández; Luis E Eguiarte; Yves Vigouroux; Domenica Manicacci; Maud I Tenaillon
Journal:  PLoS Genet       Date:  2019-12-20       Impact factor: 5.917

10.  Evaluation of the Minimum Sampling Design for Population Genomic and Microsatellite Studies: An Analysis Based on Wild Maize.

Authors:  Jonás A Aguirre-Liguori; Javier A Luna-Sánchez; Jaime Gasca-Pineda; Luis E Eguiarte
Journal:  Front Genet       Date:  2020-09-18       Impact factor: 4.599

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