| Literature DB >> 28607807 |
Francesco La Marra1, Giuseppe Stinco1,2, Cinzia Buligan1,2, Giovanni Chiriacò1, Diego Serraino1, Carla Di Loreto1, Sabina Cauci1.
Abstract
OBJECTIVE: : Vitamin D receptor (VDR) mediates vitamin D activity. We examined whether VDR expression in excised melanoma tissues is associated with VDR gene (VDR) polymorphisms.Entities:
Keywords: FokI polymorphism; VDR polymorphism; VDR protein expression; Vitamin D receptor; cutaneous melanoma; metastatic melanoma; predictive biomarkers; skin cancer
Year: 2017 PMID: 28607807 PMCID: PMC5444928 DOI: 10.20892/j.issn.2095-3941.2017.0020
Source DB: PubMed Journal: Cancer Biol Med ISSN: 2095-3941 Impact factor: 4.248
1Representative image of VDR protein expression in cutaneous melanoma tissue. Melanoma showing diffuse positivity for VDR expression. Eroded epidermis (H&E staining, 25×. Bar indicates 50 μm).
2Representative image of VDR protein expression in cutaneous melanoma tissue. Melanoma featuring tumor-infiltrating lymphocytes (TILs). Intraepidermal component of lesion (at the bottom of image) shows strong positivity for VDR expression (H&E staining, 25×. Bar indicates 50 μm).
3Representative image of VDR protein expression in cutaneous melanoma tissue. Melanoma featuring TILs. In this case, melanoma cells nesting in the dermis are negative throughout the whole lesion (H&E staining, 25×. Bar indicates 50 μm).
Clinical characteristics of 74 consecutively enrolled melanoma patients and comparison between groups of 100% VDR-positive cells (n=12) vs. <100% ( n=62); over the median (>20%) VDR-positive cells (n=36) vs. below or equal the median (≤20%) (n=38); and absence of VDR-positive cell (n=15) vs. remaining cases with detected VDR expression (n=59)
| Characteristics | All melanoma patients ( | 100% VDR- positive cells ( | <100% VDR- positive cells ( | >20%a VDR- positive cells ( | ≤20% VDR- positive cells ( | VDR absence (0% positive) ( | VDR presence (>0% positive) ( | PVDR absence | ||
| Age at melanoma diagnosis, years, mean ± SD | 52.1±12.7 | 49.8±13.0 | 52.7±12.9 | 0.519a | 51.7±13.9 | 52.8±12.0 | 0.770a | 51.5±14.5 | 52.5±12.6 | 0.767a |
| Age <50 years at melanoma diagnosis | 31 (41.9) | 6 (50.0) | 25 (40.3) | 0.534 | 16 (44.4) | 15 (39.5) | 0.665 | 7 (46.7) | 24 (40.7) | 0.675 |
| BMI, kg/m2, mean ± SD | 25.8±4.0 | 25.0±4.6 | 25.9±3.9 | 0.412a | 26.0±4.3 | 25.6±3.8 | 0.804a | 25.7±2.6 | 25.8±4.3 | 0.762a |
| Male | 39 (52.7) | 6 (50.0) | 33 (53.2) | 0.838 | 20 (55.6) | 19 (50.0) | 0.632 | 9 (60.0) | 30 (50.8) | 0.526 |
| Smoker | 11 (14.9) | 2 (16.7) | 9 (14.5) | 1.000 | 4 (11.1) | 7 (18.4) | 0.377 | 2 (13.3) | 9 (15.3) | 1.000 |
| Stage I | 38 (51.4) | 6 (50.0) | 32 (51.6) | 0.919 | 23 (63.9) | 15 (39.5) | 0.036 | 6 (40.0) | 32 (54.2) | 0.325 |
| Stage II | 16 (21.6) | 2 (16.7) | 14 (22.6) | 1.000 | 4 (11.1) | 12 (31.6) | 0.033 | 6 (40.0) | 10 (16.9) | 0.077 |
| Stage III | 10 (13.5) | 3 (25.0) | 7 (11.3) | 0.351 | 6 (16.7) | 4 (10.5) | 0.510 | 1 (6.7) | 9 (15.3) | 0.676 |
| Stage IV | 10 (13.5) | 1 (8.3) | 9 (14.5) | 1.000 | 3 (8.3) | 7 (18.4) | 0.310 | 2 (13.3) | 8 (13.6) | 1.000 |
| Metastatic melanoma (Stage III +IV) | 20 (27.0) | 4 (33.3) | 16 (25.8) | 0.724 | 9 (25.0) | 11 (28.9) | 0.702 | 3 (20.0) | 17 (28.8) | 0.746 |
| Trunk | 47 (63.5) | 5 (41.7) | 42 (67.7) | 0.108 | 24 (66.7) | 23 (60.5) | 0.583 | 7 (46.7) | 40 (67.8) | 0.129 |
| Upper limb | 6 (8.1) | 2 (16.7) | 4 (6.5) | 0.249 | 2 (5.6) | 4 (10.5) | 0.675 | 3 (20.0) | 3 (5.1) | 0.093 |
| >Lower limb | 14 (18.9) | 3 (25.0) | 11 (17.7) | 0.687 | 7 (19.4) | 7 (18.4) | 0.911 | 4 (26.7) | 10 (16.9) | 0.463 |
| Hands/feet | 5 (6.8) | 2 (16.7) | 3 (4.8) | 0.183 | 2 (5.6) | 3 (7.9) | 1.000 | 0 (–) | 5 (8.5) | 0.576 |
| Head/neck | 2 (2.7) | 0 (–) | 2 (3.2) | 1.000 | 1 (2.8) | 1 (2.6) | 1.000 | 1 (6.7) | 1 (1.7) | 0.367 |
| Superficial spreading | 37 (50.0) | 7 (58.3) | 30 (48.4) | 0.528 | 22 (61.1) | 15 (39.5) | 0.063 | 6 (40.0) | 31 (52.5) | 0.386 |
| Nodular | 31 (41.9) | 4 (33.3) | 27 (43.5) | 0.512 | 12 (33.3) | 19 (50.0) | 0.146 | 8 (53.3) | 23 (39.0) | 0.314 |
| Acral lentiginous | 3 (4.1) | 1 (8.3) | 2 (3.2) | 0.417 | 1 (2.8) | 2 (5.3) | 1.000 | 0 (–) | 3 (5.1) | 1.000 |
| Spitzoide | 2 (2.7) | 0 (–) | 2 (3.2) | 1.000 | 1 (2.8) | 1 (2.6) | 1.000 | 1 (6.7) | 1 (1.7) | 0.367 |
| Others | 3 (4.1) | 0 (–) | 3 (4.8) | 1.000 | 0 (–) | 3 (7.9) | 0.240 | 0 (–) | 3 (5.1) | 1.000 |
| Breslow thickness, mm, mean ± SD | 1.77±1.62 | 1.34±0.94 | 1.85±1.71 | 0.416a | 1.23±0.88 | 2.27±1.97 | 0.008a | 2.16±1.88 | 1.66±1.55 | 0.145a |
| Continued | ||||||||||
Clinical characteristics of 74 consecutively enrolled melanoma patients and comparison between groups of 100% VDR-positive cells (n=12) vs. <100% ( n=62); over the median (>20%) VDR-positive cell (n=36) vs. below or equal the median (≤20%) (n=38); and absence of VDR-positive cell (n=15) vs. remaining cases with detected VDR expression (n=59)
| Characteristics | All melanoma patients ( | 100% VDR-positive cells ( | <100% VDR-positive cells ( | OR (CI)100% | >20%a VDR-positive cells ( | ≤20% VDR-positive cells ( | OR (CI)>20% | VDR absence (0% positive)( | VDR presence (>0% positive)( | OR (CI)VDR absence | PVDR absence | ||
| Age at melanoma diagnosis, years, mean ± SD | 52.1±12.7 | 49.8±13.0 | 52.7±12.9 | – | 0.519a | 51.7±13.9 | 52.8±12.0 | – | 0.770a | 51.5±14.5 | 52.5±12.6 | – | 0.767a |
| Age <50 years at melanoma diagnosis | 31 (41.9) | 6 (50.0) | 25 (40.3) | 1.48 (0.43–5.11) | 0.534 | 16 (44.4) | 15 (39.5) | 1.23 (0.49–3.09) | 0.665 | 7 (46.7) | 24 (40.7) | 1.28 (0.41–3.99) | 0.675 |
| BMI, kg/m2, mean ± SD | 25.8±4.0 | 25.0±4.6 | 25.9±3.9 | – | 0.412a | 26.0±4.3 | 25.6±3.8 | – | 0.804a | 25.7±2.6 | 25.8±4.3 | – | 0.762a |
| Male | 39 (52.7) | 6 (50.0) | 33 (53.2) | 0.88 (0.25–3.03) | 0.838 | 20 (55.6) | 19 (50.0) | 1.25 (0.50–3.12) | 0.632 | 9 (60.0) | 30 (50.8) | 1.45 (0.46–4.59) | 0.526 |
| Smoker | 11 (14.9) | 2 (16.7) | 9 (14.5) | 1.18 (0.22–6.28) | 1.000 | 4 (11.1) | 7 (18.4) | 0.55 (0.15–2.08) | 0.377 | 2 (13.3) | 9 (15.3) | 0.85 (0.16–4.45) | 1.000 |
| Stage I | 38 (51.4) | 6 (50.0) | 32 (51.6) | 0.94 (0.27–3.23) | 0.919 | 23 (63.9) | 15 (39.5) | 2.71 (1.06–6.95) | 0.036 | 6 (40.0) | 32 (54.2) | 0.56 (0.18–1.78) | 0.325 |
| Stage I A | 23 (31.1) | 4 (33.3) | 19 (30.6) | 1.13 (0.30–4.22) | 1.000 | 15 (41.7) | 8 (21.1) | 2.68 (0.96–7.45) | 0.055 | 3 (20.0) | 20 (33.9) | 0.49 (0.12–1.93) | 0.365 |
| Stage I B | 15 (20.3) | 2 (16.7) | 13 (21.0) | 0.75 (0.15–3.87) | 1.000 | 8 (22.2) | 7 (18.4) | 1.26 (0.41–3.94) | 0.684 | 3 (20.0) | 12 (20.3) | 0.98 (0.24–4.03) | 1.000 |
| Stage II | 16 (21.6) | 2 (16.7) | 14 (22.6) | 0.69 (0.13–3.50) | 1.000 | 4 (11.1) | 12 (31.6) | 0.27 (0.08–0.94) | 0.033 | 6 (40.0) | 10 (16.9) | 3.27 (0.95–11.3) | 0.077 |
| Stage II A | 7 (9.5) | 0 (–) | 7 (11.3) | –b | 0.590 | 0 (–) | 7 (18.4) | -b | 0.012 | 4 (26.7) | 3 (5.1) | 6.79 (1.33–34.7) | 0.028 |
| Stage II B | 9 (12.2) | 2 (16.7) | 7 (11.3) | 1.57 (0.28–8.69) | 0.633 | 4 (11.1) | 5 (13.2) | 0.82 (0.20–3.35) | 1.000 | 2 (13.3) | 7 (11.9) | 1.14 (0.21–6.16) | 1.000 |
| Stage II C | 0 (–) | 0 (–) | 0 (–) | –b | –b | 0 (–) | 0 (–) | –b | –b | 0 (–) | 0 (–) | –b | –b |
| Stage III | 10 (13.5) | 3 (25.0) | 7 (11.3) | 2.62 (0.57–12.0) | 0.351 | 6 (16.7) | 4 (10.5) | 1.70 (0.44–6.60) | 0.510 | 1 (6.7) | 9 (15.3) | 0.40 (0.05–3.40) | 0.676 |
| Stage III A | 4 (5.4) | 1 (8.3) | 3 (4.8) | 1.79 (0.17–18.8) | 0.515 | 3 (8.3) | 1 (2.6) | 3.36 (0.33–33.9) | 0.351 | 0 (–) | 4 (6.8) | –b | 0.576 |
| Stage III B | 3 (4.1) | 0 (–) | 3 (4.8) | –b | 1.000 | 0 (–) | 3 (7.9) | –b | 0.240 | 1 (6.7) | 2 (3.4) | 2.04 (0.17–24.1) | 0.499 |
| Stage III C | 3 (4.1) | 2 (16.7) | 1 (1.6) | 12.2 (1.01–147) | 0.067 | 3 (8.3) | 0 (–) | –b | 0.110 | 0 (–) | 3 (5.1) | –b | 1.000 |
| Continued | |||||||||||||
Genotype and allele of ApaI, VDR-polymorphism, and BsmI-ApaI, ApaI-TaqI, BsmI-ApaI-TaqI combined genotypes of 74 melanoma patients and comparisons between groups of 100% VDR-positive cells (n=12) vs. <100% ( n=62); over the median (>20%) VDR-positive cells (n=36) vs. below or equal the median (≤20%) (n=38); and absence of VDR-positive cell (n=15) vs. remaining cases with detected VDR expression (n=59)
| All melanoma patients ( | 100% VDR-positive cells ( | <100% VDR-positive cells ( | >20%a VDR-positive cells ( | ≤20% VDR-positive cells ( | VDR absence (0% positive)( | VDR presence (>0% positive)( | PVDR absence | |||
| a Over the median value of percentage (%) of cells positive for VDR protein. | ||||||||||
| ApaI genotype | ||||||||||
| AA | 30 (40.5) | 8 (66.7) | 22 (35.5) | 0.058 | 13 (36.1) | 17 (44.7) | 0.450 | 8 (53.3) | 22 (37.3) | 0.258 |
| Aa | 36 (48.6) | 4 (33.3) | 32 (51.6) | 0.246 | 22 (61.1) | 14 (36.8) | 0.037 | 5 (33.3) | 31 (52.5) | 0.184 |
| aa | 8 (10.8) | 0 (–) | 8 (12.9) | 0.339 | 1 (2.8) | 7 (18.4) | 0.056 | 2 (13.3) | 6 (10.2) | 0.660 |
| A allele | 96/148 (64.9) | 20/24 (83.3) | 76/124 (61.3) | 0.038 | 48/72 (66.7) | 48/76 (63.2) | 0.655 | 21/30 (70.0) | 75/118 (63.6) | 0.509 |
| a allele | 52/148 (35.1) | 4/24 (16.7) | 48/124 (38.7) | 0.038 | 24/72 (33.3) | 28/76 (36.8) | 0.655 | 9/30 (30.0) | 43/118 (36.4) | 0.509 |
| BsmI-ApaI combined genotype | ||||||||||
| BBAA | 23 (31.1) | 5 (41.7) | 18 (29.0) | 0.498 | 9 (25.0) | 14 (36.8) | 0.271 | 6 (40.0) | 17 (28.8) | 0.533 |
| BbAA | 5 (6.8) | 3 (25.0) | 2 (3.2) | 0.028 | 4 (11.1) | 1 (2.6) | 0.194 | 1 (6.7) | 4 (6.8) | 1.000 |
| BbAa | 31 (41.9) | 1 (8.3) | 30 (48.4) | 0.010 | 18 (50.0) | 13 (34.2) | 0.169 | 5 (33.3) | 26 (44.1) | 0.452 |
| Bbaa | 2 (2.7) | 0 (–) | 2 (3.2) | 1.000 | 0 (–) | 2 (5.3) | 0.494 | 0 (–) | 2 (3.4) | 1.000 |
| bbAA | 2 (2.7) | 0 (–) | 2 (3.2) | 1.000 | 0 (–) | 2 (5.3) | 0.494 | 1 (6.7) | 1 (1.7) | 0.367 |
| bbAa | 5 (6.8) | 3 (25.0) | 2 (3.2) | 0.028 | 4 (11.1) | 1 (2.6) | 0.194 | 0 (–) | 5 (8.5) | 0.576 |
| bbaa | 6 (8.1) | 0 (–) | 6 (9.7) | 0.581 | 1 (2.8) | 5 (13.2) | 0.200 | 2 (13.3) | 4 (6.8) | 0.595 |
| ApaI-TaqI combined genotype | ||||||||||
| AATT | 4 (5.4) | 0 (–) | 4 (6.5) | 1.000 | 0 (–) | 4 (10.5) | 0.115 | 3 (20.0) | 1 (1.7) | 0.025 |
| AATt | 14 (18.9) | 6 (50.0) | 8 (12.9) | 0.008 | 9 (25.0) | 5 (13.2) | 0.194 | 4 (26.7) | 10 (16.9) | 0.463 |
| AAtt | 12 (16.2) | 2 (16.7) | 10 (16.1) | 1.000 | 4 (11.1) | 8 (21.1) | 0.246 | 1 (6.7) | 11 (18.6) | 0.439 |
| AaTT | 12 (16.2) | 3 (25.0) | 9 (14.5) | 0.399 | 9 (25.0) | 3 (7.9) | 0.046 | 1 (6.7) | 11 (18.6) | 0.439 |
| AaTt | 24 (32.4) | 1 (8.3) | 23 (37.1) | 0.089 | 13 (36.1) | 11 (28.9) | 0.511 | 4 (26.7) | 20 (33.9) | 0.761 |
| aaTT | 8 (10.8) | 0 (–) | 8 (12.9) | 0.339 | 1 (2.8) | 7 (18.4) | 0.056 | 2 (13.3) | 6 (10.2) | 0.660 |
| BsmI-ApaI-TaqI combined genotype | ||||||||||
| BBAATT | 1 (1.4) | 0 (–) | 1 (1.6) | 1.000 | 0 (–) | 1 (2.6) | 1.000 | 1 (6.7) | 0 (–) | 0.203 |
| BBAATt | 10 (13.5) | 3 (25.0) | 7 (11.3) | 0.351 | 5 (13.9) | 5 (13.2) | 1.000 | 4 (26.7) | 6 (10.2) | 0.110 |
| BBAAtt | 12 (16.2) | 2 (16.7) | 10 (16.1) | 1.000 | 4 (11.1) | 8 (21.1) | 0.246 | 1 (6.7) | 11 (18.6) | 0.439 |
| BbAATt | 4 (5.4) | 3 (25.0) | 1 (1.6) | 0.012 | 4 (11.1) | 0 (–) | 0.051 | 0 (–) | 4 (6.8) | 0.576 |
| BbAATT | 1 (1.4) | 0 (–) | 1 (1.6) | 1.000 | 0 (–) | 1 (2.6) | 1.000 | 1 (6.7) | 0 (–) | 0.203 |
| BbAaTT | 7 (9.5) | 0 (–) | 7 (11.3) | 0.590 | 5 (13.9) | 2 (5.3) | 0.255 | 1 (6.7) | 6 (10.2) | 1.000 |
| BbAaTt | 24 (32.4) | 1 (8.3) | 23 (37.1) | 0.089 | 13 (36.1) | 11 (28.9) | 0.511 | 4 (26.7) | 20 (33.9) | 0.761 |
| BbaaTT | 2 (2.7) | 0 (–) | 2 (3.2) | 1.000 | 0 (–) | 2 (5.3) | 0.494 | 0 (–) | 2 (3.4) | 1.000 |
| bbAATT | 2 (2.7) | 0 (–) | 2 (3.2) | 1.000 | 0 (–) | 2 (5.3) | 0.494 | 1 (6.7) | 1 (1.7) | 0.367 |
| bbAaTT | 5 (6.8) | 3 (25.0) | 2 (3.2) | 0.028 | 4 (11.1) | 1 (2.6) | 0.194 | 0 (–) | 5 (8.5) | 0.576 |
| bbaaTT | 6 (8.1) | 0 (–) | 6 (9.7) | 0.581 | 1 (2.8) | 5 (13.2) | 0.200 | 2 (13.3) | 4 (6.8) | 0.595 |
Genotype and allele characteristics of FokI, BsmI, and TaqI VDR-polymorphisms and BsmI-TaqI haplotypes of 74 melanoma patients and comparisons between groups of 100% VDR-positive cells (n=12) vs. <100% ( n=62); over the median (>20%) VDR-positive cells (n=36) versus below or equal the median (≤20%) (n=38); and absence of VDR-positive cell (n=15) versus remaining cases with detected VDR expression (n=59)
| All melanoma patients ( | 100% VDR-positive cells ( | <100% VDR-positive cells ( | OR (CI) 100% | >20%a VDR-positive cells ( | ≤20% VDR-positive cells ( | OR (CI)>20% | VDR absence (0% positive)( | VDR presence (>0% positive)( | OR (CI) VDR absence | PVDR absence | |||
| FokI genotype | |||||||||||||
| FF | 32 (43.2) | 5 (41.7) | 27 (43.5) | 0.93 (0.26–3.24) | 0.904 | 16 (44.4) | 16 (42.1) | 1.10 (0.44–2.76) | 0.839 | 7 (46.7) | 25 (42.4) | 1.19 (0.38–3.71) | 0.764 |
| Ff | 33 (44.6) | 5 (41.7) | 28 (45.2) | 0.87 (0.25–3.03) | 0.824 | 14 (38.9) | 19 (50.0) | 0.64 (0.25–1.60) | 0.337 | 6 (40.0) | 27 (45.8) | 0.79 (0.25–2.50) | 0.688 |
| ff | 9 (12.2) | 2 (16.7) | 7 (11.3) | 1.57 (0.28–8.69) | 0.633 | 6 (16.7) | 3 (7.9) | 2.33 (0.54–10.1) | 0.302 | 2 (13.3) | 7 (11.9) | 1.14 (0.21–6.16) | 1.000 |
| F allele | 97/148 (65.5) | 15/24 (62.5) | 82/124 (66.1) | 0.85 (0.34–2.11) | 0.732 | 46/72 (63.9) | 51/76 (67.1) | 0.87 (0.44–1.71) | 0.681 | 20/30 (66.7) | 77/118 (65.3) | 1.06 (0.46–2.49) | 0.884 |
| f allele | 51/148 (34.5) | 9/24 (37.5) | 42/124 (33.9) | 1.17 (0.47–2.90 | 0.732 | 26/72 (36.1) | 25/76 (32.9) | 1.15 (0.58–2.27) | 0.681 | 10/30 (33.3) | 41/118 (34.7) | 0.94 (0.40–2.19) | 0.884 |
| BsmI genotype | |||||||||||||
| BB | 23 (31.1) | 5 (41.7) | 18 (29.0) | 1.75 (0.49–6.23) | 0.498 | 9 (25.0) | 14 (36.8) | 0.57 (0.21–1.56) | 0.271 | 6 (40.0) | 17 (28.8) | 1.65 (0.51–5.34) | 0.533 |
| Bb | 38 (51.4) | 4 (33.3) | 34 (54.8) | 0.41 (0.11–1.51) | 0.172 | 22 (61.1) | 16 (42.1) | 2.16 (0.85–5.47) | 0.102 | 6 (40.0) | 32 (54.2) | 0.56 (0.18–1.78) | 0.325 |
| bb | 13 (17.6) | 3 (25.0) | 10 (16.1) | 1.73 (0.40–7.55) | 0.432 | 5 (13.9) | 8 (21.1) | 0.60 (0.18–2.06) | 0.418 | 3 (20.0) | 10 (16.9) | 1.22 (0.29–5.15) | 0.719 |
| Continued | |||||||||||||
Genotype and allele of ApaI, VDR-polymorphism, and BsmI-ApaI, ApaI-TaqI, BsmI-ApaI-TaqI combined genotypes of 74 melanoma patients and comparisons between groups of 100% VDR-positive cells (n=12) vs. <100% ( n=62); over the median (>20%) VDR-positive cells (n=36) vs. below or equal the median (≤20%) (n=38); and absence of VDR-positive cell (n=15) vs. remaining cases with detected VDR expression (n=59)
| All melanoma patients ( | 100% VDR-positive cells ( | <100% VDR-positive cells ( | OR (CI) 100% | >20%a VDR-positive cells ( | ≤20% VDR-positive cells ( | OR (CI)>20% | VDR absence (0% positive)( | VDR presence (>0% positive)( | OR (CI) VDR absencevs. presence | PVDR absence | |||
| ApaI genotype | |||||||||||||
| AA | 30 (40.5) | 8 (66.7) | 22 (35.5) | 3.64 (0.98–13.5) | 0.058 | 13 (36.1) | 17 (44.7) | 0.70 (0.27–1.78) | 0.450 | 8 (53.3) | 22 (37.3) | 1.92 (0.61–6.03) | 0.258 |
| Aa | 36 (48.6) | 4 (33.3) | 32 (51.6) | 0.47 (0.13–1.72) | 0.246 | 22 (61.1) | 14 (36.8) | 2.69 (1.05–6.90) | 0.037 | 5 (33.3) | 31 (52.5) | 0.45 (0.14–1.48) | 0.184 |
| aa | 8 (10.8) | 0 (–) | 8 (12.9) | –b | 0.339 | 1 (2.8) | 7 (18.4) | 0.13 (0.01–1.09) | 0.056 | 2 (13.3) | 6 (10.2) | 1.36 (0.24–7.52) | 0.660 |
| A allele | 96/148 (64.9) | 20/24 (83.3) | 76/124 (61.3) | 3.16 (1.02–9.80) | 0.038 | 48/72 (66.7) | 48/76 (63.2) | 1.17 (0.59–2.29) | 0.655 | 21/30 (70.0) | 75/118 (63.6) | 1.34 (0.56–3.18) | 0.509 |
| a allele | 52/148 (35.1) | 4/24 (16.7) | 48/124 (38.7) | 0.32 (0.10–0.98) | 0.038 | 24/72 (33.3) | 28/76 (36.8) | 0.86 (0.44–1.69) | 0.655 | 9/30 (30.0) | 43/118 (36.4) | 0.75 (0.31–1.78) | 0.509 |
| BsmI-ApaI combined genotype | |||||||||||||
| BBAA | 23 (31.1) | 5 (41.7) | 18 (29.0) | 1.75 (0.49–6.23) | 0.498 | 9 (25.0) | 14 (36.8) | 0.57 (0.21–1.56) | 0.271 | 6 (40.0) | 17 (28.8) | 1.65 (0.51–5.34) | 0.533 |
| BbAA | 5 (6.8) | 3 (25.0) | 2 (3.2) | 10.0 (1.46–68.3) | 0.028 | 4 (11.1) | 1 (2.6) | 4.62 (0.49–43.5) | 0.194 | 1 (6.7) | 4 (6.8) | 0.98 (0.10–9.49) | 1.000 |
| BbAa | 31 (41.9) | 1 (8.3) | 30 (48.4) | 0.10 (0.01–0.80) | 0.010 | 18 (50.0) | 13 (34.2) | 1.92 (0.75–4.90) | 0.169 | 5 (33.3) | 26 (44.1) | 0.63 (0.19–2.09) | 0.452 |
| Bbaa | 2 (2.7) | 0 (–) | 2 (3.2) | –b | 1.000 | 0 (–) | 2 (5.3) | –b | 0.494 | 0 (–) | 2 (3.4) | –b | 1.000 |
| bbAA | 2 (2.7) | 0 (–) | 2 (3.2) | –b | 1.000 | 0 (–) | 2 (5.3) | –b | 0.494 | 1 (6.7) | 1 (1.7) | 4.14 (0.24–70.4) | 0.367 |
| bbAa | 5 (6.8) | 3 (25.0) | 2 (3.2) | 10.0 (1.46–68.3) | 0.028 | 4 (11.1) | 1 (2.6) | 4.62 (0.49–43.5) | 0.194 | 0 (–) | 5 (8.5) | –b | 0.576 |
| bbaa | 6 (8.1) | 0 (–) | 6 (9.7) | –b | 0.581 | 1 (2.8) | 5 (13.2) | 0.19 (0.02–1.70) | 0.200 | 2 (13.3) | 4 (6.8) | 2.11 (0.35–12.8) | 0.595 |
| ApaI-TaqI combined genotype | |||||||||||||
| AATT | 4 (5.4) | 0 (–) | 4 (6.5) | –b | 1.000 | 0 (–) | 4 (10.5) | –b | 0.115 | 3 (20.0) | 1 (1.7) | 14.5 (1.39–152) | 0.025 |
| AATt | 14 (18.9) | 6 (50.0) | 8 (12.9) | 6.75 (1.74–26.1) | 0.008 | 9 (25.0) | 5 (13.2) | 2.20 (0.66–7.35) | 0.194 | 4 (26.7) | 10 (16.9) | 1.78 (0.47–6.74) | 0.463 |
| AAtt | 12 (16.2) | 2 (16.7) | 10 (16.1) | 1.04 (0.20–5.48) | 1.000 | 4 (11.1) | 8 (21.1) | 0.47 (0.13–1.72) | 0.246 | 1 (6.7) | 11 (18.6) | 0.31 (0.04–2.63) | 0.439 |
| AaTT | 12 (16.2) | 3 (25.0) | 9 (14.5) | 1.96 (0.44–8.67) | 0.399 | 9 (25.0) | 3 (7.9) | 3.89 (0.96–15.8) | 0.046 | 1 (6.7) | 11 (18.6) | 0.31 (0.04–2.63) | 0.439 |
| AaTt | 24 (32.4) | 1 (8.3) | 23 (37.1) | 0.15 (0.02–1.27) | 0.089^ | 13 (36.1) | 11 (28.9) | 1.39 (0.52–3.68) | 0.511 | 4 (26.7) | 20 (33.9) | 0.71 (0.20–2.51) | 0.761 |
| aaTT | 8 (10.8) | 0 (–) | 8 (12.9) | –b | 0.339 | 1 (2.8) | 7 (18.4) | 0.13 (0.01–1.09) | 0.056 | 2 (13.3) | 6 (10.2) | 1.36 (0.24–7.52) | 0.660 |
| BsmI-ApaI-TaqI combined genotype | |||||||||||||
| BBAATT | 1 (1.4) | 0 (–) | 1 (1.6) | –b | 1.000 | 0 (–) | 1 (2.6) | –b | 1.000 | 1 (6.7) | 0 (–) | –b | 0.203 |
| BBAATt | 10 (13.5) | 3 (25.0) | 7 (11.3) | 2.62 (0.57–12.0) | 0.351 | 5 (13.9) | 5 (13.2) | 1.06 (0.28–4.04) | 1.000 | 4 (26.7) | 6 (10.2) | 3.21 (0.77–13.3) | 0.110 |
| Continued | |||||||||||||