Literature DB >> 28604902

What if the number of nanotoxicity data is too small for developing predictive Nano-QSAR models? An alternative read-across based approach for filling data gaps.

Agnieszka Gajewicz1.   

Abstract

Over the past decade, computational nanotoxicology, in particular Quantitative Structure-Activity Relationship models (Nano-QSAR) that help in assessing the biological effects of nanomaterials, have received much attention. In effect, a solid basis for uncovering the relationships between the structure and property/activity of nanoparticles has been created. Nonetheless, six years after the first pioneering computational studies focusing on the investigation of nanotoxicity were commenced, these computational methods still suffer from many limitations. These are mainly related to the paucity of widely available, systematically varied, libraries of experimental data necessary for the development and validation of such models. This results in the still-low acceptance of these methods as valuable research tools for nanosafety and raises the query as to whether these methods could gain wide acceptance of regulatory bodies as alternatives for traditional in vitro methods. This study aimed to give an answer to the following question: How to remedy the paucity of experimental nanotoxicity data and thereby, overcome key roadblock that hinders the development of approaches for data-driven modeling of nanoparticle properties and toxicities? Here, a simple and transparent read-across algorithm for a pre-screening hazard assessment of nanomaterials that provides reasonably accurate results by making the best use of existing limited set of observations will be introduced.

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Mesh:

Year:  2017        PMID: 28604902     DOI: 10.1039/c7nr02211e

Source DB:  PubMed          Journal:  Nanoscale        ISSN: 2040-3364            Impact factor:   7.790


  9 in total

Review 1.  QSAR without borders.

Authors:  Eugene N Muratov; Jürgen Bajorath; Robert P Sheridan; Igor V Tetko; Dmitry Filimonov; Vladimir Poroikov; Tudor I Oprea; Igor I Baskin; Alexandre Varnek; Adrian Roitberg; Olexandr Isayev; Stefano Curtarolo; Denis Fourches; Yoram Cohen; Alan Aspuru-Guzik; David A Winkler; Dimitris Agrafiotis; Artem Cherkasov; Alexander Tropsha
Journal:  Chem Soc Rev       Date:  2020-05-01       Impact factor: 54.564

Review 2.  Nanotechnology and artificial intelligence to enable sustainable and precision agriculture.

Authors:  Peng Zhang; Zhiling Guo; Sami Ullah; Georgia Melagraki; Antreas Afantitis; Iseult Lynch
Journal:  Nat Plants       Date:  2021-06-24       Impact factor: 15.793

3.  Identifying diverse metal oxide nanomaterials with lethal effects on embryonic zebrafish using machine learning.

Authors:  Richard Liam Marchese Robinson; Haralambos Sarimveis; Philip Doganis; Xiaodong Jia; Marianna Kotzabasaki; Christiana Gousiadou; Stacey Lynn Harper; Terry Wilkins
Journal:  Beilstein J Nanotechnol       Date:  2021-11-29       Impact factor: 3.649

Review 4.  Experimental and Computational Nanotoxicology-Complementary Approaches for Nanomaterial Hazard Assessment.

Authors:  Valérie Forest
Journal:  Nanomaterials (Basel)       Date:  2022-04-14       Impact factor: 5.719

5.  Evaluating the cytotoxicity of a large pool of metal oxide nanoparticles to Escherichia coli: Mechanistic understanding through In Vitro and In Silico studies.

Authors:  Supratik Kar; Kavitha Pathakoti; Paul B Tchounwou; Danuta Leszczynska; Jerzy Leszczynski
Journal:  Chemosphere       Date:  2020-09-25       Impact factor: 7.086

Review 6.  Continued Efforts on Nanomaterial-Environmental Health and Safety Is Critical to Maintain Sustainable Growth of Nanoindustry.

Authors:  Sijin Liu; Tian Xia
Journal:  Small       Date:  2020-04-27       Impact factor: 13.281

7.  INSIdE NANO: a systems biology framework to contextualize the mechanism-of-action of engineered nanomaterials.

Authors:  Angela Serra; Ivica Letunic; Vittorio Fortino; Richard D Handy; Bengt Fadeel; Roberto Tagliaferri; Dario Greco
Journal:  Sci Rep       Date:  2019-01-17       Impact factor: 4.379

Review 8.  Practices and Trends of Machine Learning Application in Nanotoxicology.

Authors:  Irini Furxhi; Finbarr Murphy; Martin Mullins; Athanasios Arvanitis; Craig A Poland
Journal:  Nanomaterials (Basel)       Date:  2020-01-08       Impact factor: 5.076

Review 9.  NanoSolveIT Project: Driving nanoinformatics research to develop innovative and integrated tools for in silico nanosafety assessment.

Authors:  Antreas Afantitis; Georgia Melagraki; Panagiotis Isigonis; Andreas Tsoumanis; Dimitra Danai Varsou; Eugenia Valsami-Jones; Anastasios Papadiamantis; Laura-Jayne A Ellis; Haralambos Sarimveis; Philip Doganis; Pantelis Karatzas; Periklis Tsiros; Irene Liampa; Vladimir Lobaskin; Dario Greco; Angela Serra; Pia Anneli Sofia Kinaret; Laura Aliisa Saarimäki; Roland Grafström; Pekka Kohonen; Penny Nymark; Egon Willighagen; Tomasz Puzyn; Anna Rybinska-Fryca; Alexander Lyubartsev; Keld Alstrup Jensen; Jan Gerit Brandenburg; Stephen Lofts; Claus Svendsen; Samuel Harrison; Dieter Maier; Kaido Tamm; Jaak Jänes; Lauri Sikk; Maria Dusinska; Eleonora Longhin; Elise Rundén-Pran; Espen Mariussen; Naouale El Yamani; Wolfgang Unger; Jörg Radnik; Alexander Tropsha; Yoram Cohen; Jerzy Leszczynski; Christine Ogilvie Hendren; Mark Wiesner; David Winkler; Noriyuki Suzuki; Tae Hyun Yoon; Jang-Sik Choi; Natasha Sanabria; Mary Gulumian; Iseult Lynch
Journal:  Comput Struct Biotechnol J       Date:  2020-03-07       Impact factor: 7.271

  9 in total

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