Literature DB >> 28603454

Advancing Genomics through the Global Invertebrate Genomics Alliance (GIGA).

Christian R Voolstra, Gert Wörheide, Jose V Lopez.   

Abstract

The Global Invertebrate Genomics Alliance (GIGA), a collaborative network of diverse scientists, marked its second anniversary with a workshop in Munich, Germany, where international attendees focused on discussing current progress, milestones and bioinformatics resources. The community determined the recruitment and training talented researchers as one of the most pressing future needs and identified opportunities for network funding. GIGA also promotes future research efforts to prioritize taxonomic diversity and create new synergies. Here, we announce the generation of a central and simple data repository portal with a wide coverage of available sequence data, via the compagen platform, in parallel with more focused and specialized organism databases to globally advance invertebrate genomics. Therefore this article serves the objectives of GIGA by disseminating current progress and future prospects in the science of invertebrate genomics with the aim of promotion and facilitation of interdisciplinary and international research.

Entities:  

Keywords:  Biodiversity; Metazoa; evolution; genetics

Year:  2017        PMID: 28603454      PMCID: PMC5464758          DOI: 10.1071/is16059

Source DB:  PubMed          Journal:  Invertebr Syst        ISSN: 1445-5226            Impact factor:   2.583


  19 in total

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Authors:  Casey W Dunn; Joseph F Ryan
Journal:  Curr Opin Genet Dev       Date:  2015-09-09       Impact factor: 5.578

2.  The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes.

Authors:  Heather Bracken-Grissom; Allen G Collins; Timothy Collins; Keith Crandall; Daniel Distel; Casey Dunn; Gonzalo Giribet; Steven Haddock; Nancy Knowlton; Mark Martindale; Mónica Medina; Charles Messing; Stephen J O'Brien; Gustav Paulay; Nicolas Putnam; Timothy Ravasi; Greg W Rouse; Joseph F Ryan; Anja Schulze; Gert Wörheide; Maja Adamska; Xavier Bailly; Jesse Breinholt; William E Browne; M Christina Diaz; Nathaniel Evans; Jean-François Flot; Nicole Fogarty; Matthew Johnston; Bishoy Kamel; Akito Y Kawahara; Tammy Laberge; Dennis Lavrov; François Michonneau; Leonid L Moroz; Todd Oakley; Karen Osborne; Shirley A Pomponi; Adelaide Rhodes; Scott R Santos; Nori Satoh; Robert W Thacker; Yves Van de Peer; Christian R Voolstra; David Mark Welch; Judith Winston; Xin Zhou
Journal:  J Hered       Date:  2014 Jan-Feb       Impact factor: 2.645

3.  Compagen, a comparative genomics platform for early branching metazoan animals, reveals early origins of genes regulating stem-cell differentiation.

Authors:  Georg Hemmrich; Thomas C G Bosch
Journal:  Bioessays       Date:  2008-10       Impact factor: 4.345

Review 4.  The Genome 10K Project: a way forward.

Authors:  Klaus-Peter Koepfli; Benedict Paten; Stephen J O'Brien
Journal:  Annu Rev Anim Biosci       Date:  2015       Impact factor: 8.923

5.  Research philanthropy. Billionaire restores funding for novel biomedical network.

Authors:  Jennifer Couzin-Frankel
Journal:  Science       Date:  2012-11-16       Impact factor: 47.728

6.  Challenges and Opportunities for Genomics Education: Insights from an Institute of Medicine Roundtable Activity.

Authors:  Michael J Dougherty; Catherine Wicklund; Katherine A Johansen Taber
Journal:  J Contin Educ Health Prof       Date:  2016       Impact factor: 1.355

7.  Genomic information infrastructure after the deluge.

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Journal:  Genome Biol       Date:  2010-07-26       Impact factor: 13.583

8.  No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini.

Authors:  Georgios Koutsovoulos; Sujai Kumar; Dominik R Laetsch; Lewis Stevens; Jennifer Daub; Claire Conlon; Habib Maroon; Fran Thomas; Aziz A Aboobaker; Mark Blaxter
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-24       Impact factor: 11.205

9.  Big Data: Astronomical or Genomical?

Authors:  Zachary D Stephens; Skylar Y Lee; Faraz Faghri; Roy H Campbell; Chengxiang Zhai; Miles J Efron; Ravishankar Iyer; Michael C Schatz; Saurabh Sinha; Gene E Robinson
Journal:  PLoS Biol       Date:  2015-07-07       Impact factor: 8.029

10.  The founding charter of the Genomic Observatories Network.

Authors:  Neil Davies; Dawn Field; Linda Amaral-Zettler; Melody S Clark; John Deck; Alexei Drummond; Daniel P Faith; Jonathan Geller; Jack Gilbert; Frank Oliver Glöckner; Penny R Hirsch; Jo-Ann Leong; Chris Meyer; Matthias Obst; Serge Planes; Chris Scholin; Alfried P Vogler; Ruth D Gates; Rob Toonen; Véronique Berteaux-Lecellier; Michèle Barbier; Katherine Barker; Stefan Bertilsson; Mesude Bicak; Matthew J Bietz; Jason Bobe; Levente Bodrossy; Angel Borja; Jonathan Coddington; Jed Fuhrman; Gunnar Gerdts; Rosemary Gillespie; Kelly Goodwin; Paul C Hanson; Jean-Marc Hero; David Hoekman; Janet Jansson; Christian Jeanthon; Rebecca Kao; Anna Klindworth; Rob Knight; Renzo Kottmann; Michelle S Koo; Georgios Kotoulas; Andrew J Lowe; Viggó Thór Marteinsson; Folker Meyer; Norman Morrison; David D Myrold; Evangelos Pafilis; Stephanie Parker; John Jacob Parnell; Paraskevi N Polymenakou; Sujeevan Ratnasingham; George K Roderick; Naiara Rodriguez-Ezpeleta; Karsten Schonrogge; Nathalie Simon; Nathalie J Valette-Silver; Yuri P Springer; Graham N Stone; Steve Stones-Havas; Susanna-Assunta Sansone; Kate M Thibault; Patricia Wecker; Antje Wichels; John C Wooley; Tetsukazu Yahara; Adriana Zingone
Journal:  Gigascience       Date:  2014-03-07       Impact factor: 6.524

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  6 in total

1.  Faraway, so close. The comparative method and the potential of non-model animals in mitochondrial research.

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Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-12-02       Impact factor: 6.237

2.  Signatures of Divergence, Invasiveness, and Terrestrialization Revealed by Four Apple Snail Genomes.

Authors:  Jin Sun; Huawei Mu; Jack C H Ip; Runsheng Li; Ting Xu; Alice Accorsi; Alejandro Sánchez Alvarado; Eric Ross; Yi Lan; Yanan Sun; Alfredo Castro-Vazquez; Israel A Vega; Horacio Heras; Santiago Ituarte; Bert Van Bocxlaer; Kenneth A Hayes; Robert H Cowie; Zhongying Zhao; Yu Zhang; Pei-Yuan Qian; Jian-Wen Qiu
Journal:  Mol Biol Evol       Date:  2019-07-01       Impact factor: 16.240

3.  Ten simple rules for getting started with command-line bioinformatics.

Authors:  Parice A Brandies; Carolyn J Hogg
Journal:  PLoS Comput Biol       Date:  2021-02-18       Impact factor: 4.475

4.  Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam.

Authors:  Jack Chi-Ho Ip; Ting Xu; Jin Sun; Runsheng Li; Chong Chen; Yi Lan; Zhuang Han; Haibin Zhang; Jiangong Wei; Hongbin Wang; Jun Tao; Zongwei Cai; Pei-Yuan Qian; Jian-Wen Qiu
Journal:  Mol Biol Evol       Date:  2021-01-23       Impact factor: 16.240

5.  Representing sex chromosomes in genome assemblies.

Authors:  Sarah B Carey; John T Lovell; Jerry Jenkins; Jim Leebens-Mack; Jeremy Schmutz; Melissa A Wilson; Alex Harkess
Journal:  Cell Genom       Date:  2022-05-04

6.  Comparative Transcriptomics in Two Bivalve Species Offers Different Perspectives on the Evolution of Sex-Biased Genes.

Authors:  Fabrizio Ghiselli; Mariangela Iannello; Guglielmo Puccio; Peter L Chang; Federico Plazzi; Sergey V Nuzhdin; Marco Passamonti
Journal:  Genome Biol Evol       Date:  2018-06-01       Impact factor: 3.416

  6 in total

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