Literature DB >> 28601897

Histone methylation in the freeze-tolerant wood frog (Rana sylvatica).

Liam J Hawkins1, Kenneth B Storey2.   

Abstract

Freeze-tolerant animals survive sub-zero temperatures and long-term starvation associated with the winter by lowering their metabolic rate using a variety of transcriptional, translational, and post-translational regulatory methods. Histone methylation is one mechanism that is known to regulate gene expression at the transcriptional level. Here, we measured relative protein levels of seven histone methyltransferases (SMYD2, SETD7, ASH2L, RBBP5, SUV39H1, EHMT2, and SET8), four methylated histone H3 residues (H3K4me1, H3K9me3, H3K27me1, and H3K36me2), the methyltransferase activity on H3K4, and methylation of p53 (p53K370me2 and p53K372me1) in the skeletal muscle and liver of the freeze-tolerant wood frog (Rana sylvatica) during the freeze-thaw cycle. Overall, the results reveal a tissue-specific expression of histone methyltransferases and the methylation sites on histone H3 during freezing and thaw. In liver, H3K4me1 significantly decreased during freezing, H3K9me3 remained constant across conditions, H3K27me1 increased only during thaw, and H3K36me2 increased during freezing and then decreased during thaw (p < 0.05, n = 4). In skeletal muscle, H3K4me1 and H3K27me1 both decreased during freezing, whereas H3K9me3 and H3K36me2 were maintained across freezing and thaw (p < 0.05, n = 4). Methylation of p53 was also tissue-specific, where no changes were seen in liver tissue; however, p53 in skeletal muscle was differentially methylated. Overall, these results provide an evidence for the potential role methylation of histones and non-histone proteins play in freezing survival and entrance into a hypometabolic state.

Entities:  

Keywords:  Epigenetics; Freeze tolerance; Histone methylation; Metabolic rate depression; Rana sylvatica

Mesh:

Substances:

Year:  2017        PMID: 28601897     DOI: 10.1007/s00360-017-1112-7

Source DB:  PubMed          Journal:  J Comp Physiol B        ISSN: 0174-1578            Impact factor:   2.200


  65 in total

1.  Polycomb-dependent H3K27me1 and H3K27me2 regulate active transcription and enhancer fidelity.

Authors:  Karin J Ferrari; Andrea Scelfo; Sriganesh Jammula; Alessandro Cuomo; Iros Barozzi; Alexandra Stützer; Wolfgang Fischle; Tiziana Bonaldi; Diego Pasini
Journal:  Mol Cell       Date:  2013-11-27       Impact factor: 17.970

2.  Suppression of protein synthesis in brain during hibernation involves inhibition of protein initiation and elongation.

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Journal:  Proc Natl Acad Sci U S A       Date:  1998-11-24       Impact factor: 11.205

Review 3.  Histone methylation in higher plants.

Authors:  Chunyan Liu; Falong Lu; Xia Cui; Xiaofeng Cao
Journal:  Annu Rev Plant Biol       Date:  2010       Impact factor: 26.379

4.  Freezing-induced genes in wood frog (Rana sylvatica): fibrinogen upregulation by freezing and dehydration.

Authors:  Q Cai; K B Storey
Journal:  Am J Physiol       Date:  1997-05

Review 5.  Freeze tolerance in animals.

Authors:  K B Storey; J M Storey
Journal:  Physiol Rev       Date:  1988-01       Impact factor: 37.312

6.  Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex.

Authors:  Michael-Christopher Keogh; Siavash K Kurdistani; Stephanie A Morris; Seong Hoon Ahn; Vladimir Podolny; Sean R Collins; Maya Schuldiner; Kayu Chin; Thanuja Punna; Natalie J Thompson; Charles Boone; Andrew Emili; Jonathan S Weissman; Timothy R Hughes; Brian D Strahl; Michael Grunstein; Jack F Greenblatt; Stephen Buratowski; Nevan J Krogan
Journal:  Cell       Date:  2005-11-18       Impact factor: 41.582

7.  Freeze-induced expression of a novel gene, fr47, in the liver of the freeze-tolerant wood frog, Rana sylvatica.

Authors:  J Dayre McNally; Christopher M Sturgeon; Kenneth B Storey
Journal:  Biochim Biophys Acta       Date:  2003-01-27

8.  Histone H3 lysine 4 methylation patterns in higher eukaryotic genes.

Authors:  Robert Schneider; Andrew J Bannister; Fiona A Myers; Alan W Thorne; Colyn Crane-Robinson; Tony Kouzarides
Journal:  Nat Cell Biol       Date:  2003-12-07       Impact factor: 28.824

9.  Regulation of p53 by reversible post-transcriptional and post-translational mechanisms in liver and skeletal muscle of an anoxia tolerant turtle, Trachemys scripta elegans.

Authors:  Jing Zhang; Kyle K Biggar; Kenneth B Storey
Journal:  Gene       Date:  2012-11-01       Impact factor: 3.688

10.  Modulation of p53 function by SET8-mediated methylation at lysine 382.

Authors:  Xiaobing Shi; Ioulia Kachirskaia; Hiroshi Yamaguchi; Lisandra E West; Hong Wen; Evelyn W Wang; Sucharita Dutta; Ettore Appella; Or Gozani
Journal:  Mol Cell       Date:  2007-08-17       Impact factor: 17.970

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  5 in total

Review 1.  Overwintering adaptations and extreme freeze tolerance in a subarctic population of the wood frog, Rana sylvatica.

Authors:  Jon P Costanzo
Journal:  J Comp Physiol B       Date:  2018-11-02       Impact factor: 2.200

2.  Transcriptional regulation of metabolism in disease: From transcription factors to epigenetics.

Authors:  Liam J Hawkins; Rasha Al-Attar; Kenneth B Storey
Journal:  PeerJ       Date:  2018-06-15       Impact factor: 2.984

Review 3.  Muscles in Winter: The Epigenetics of Metabolic Arrest.

Authors:  W Aline Ingelson-Filpula; Kenneth B Storey
Journal:  Epigenomes       Date:  2021-12-16

4.  DNA Hypomethylation May Contribute to Metabolic Recovery of Frozen Wood Frog Brains.

Authors:  Tighe Bloskie; Kenneth B Storey
Journal:  Epigenomes       Date:  2022-07-12

5.  MCM3AP-AS1 KD Inhibits Proliferation, Invasion, and Migration of PCa Cells via DNMT1/DNMT3 (A/B) Methylation-Mediated Upregulation of NPY1R.

Authors:  Xin Li; Jiancheng Lv; Shuai Liu
Journal:  Mol Ther Nucleic Acids       Date:  2020-01-23       Impact factor: 8.886

  5 in total

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