Literature DB >> 30269884

Environmentally Controlled Curvature of Single Collagen Proteins.

Nagmeh Rezaei1, Aaron Lyons1, Nancy R Forde2.   

Abstract

The predominant structural protein in vertebrates is collagen, which plays a key role in extracellular matrix and connective tissue mechanics. Despite its prevalence and physical importance in biology, the mechanical properties of molecular collagen are far from established. The flexibility of its triple helix is unresolved, with descriptions from different experimental techniques ranging from flexible to semirigid. Furthermore, it is unknown how collagen type (homo- versus heterotrimeric) and source (tissue derived versus recombinant) influence flexibility. Using SmarTrace, a chain-tracing algorithm we devised, we performed statistical analysis of collagen conformations collected with atomic force microscopy to determine the protein's mechanical properties. Our results show that types I, II, and III collagens-the key fibrillar varieties-exhibit similar molecular flexibilities. However, collagen conformations are strongly modulated by salt, transitioning from compact to extended as KCl concentration increases in both neutral and acidic pH. Although analysis with a standard worm-like chain model suggests that the persistence length of collagen can attain a wide range of values within the literature range, closer inspection reveals that this modulation of collagen's conformational behavior is not due to changes in flexibility but rather arises from the induction of curvature (either intrinsic or induced by interactions with the mica surface). By modifying standard polymer theory to include innate curvature, we show that collagen behaves as an equilibrated curved worm-like chain in two dimensions. Analysis within the curved worm-like chain model shows that collagen's curvature depends strongly on pH and salt, whereas its persistence length does not. Thus, we find that triple-helical collagen is well described as semiflexible irrespective of source, type, pH, and salt environment. These results demonstrate that collagen is more flexible than its conventional description as a rigid rod, which may have implications for its cellular processing and secretion.
Copyright © 2018 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2018        PMID: 30269884      PMCID: PMC6260212          DOI: 10.1016/j.bpj.2018.09.003

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  55 in total

1.  Direct quantification of the flexibility of type I collagen monomer.

Authors:  Yu-Long Sun; Zong-Ping Luo; Andrzej Fertala; Kai-Nan An
Journal:  Biochem Biophys Res Commun       Date:  2002-07-12       Impact factor: 3.575

2.  Microfibrillar structure of type I collagen in situ.

Authors:  Joseph P R O Orgel; Thomas C Irving; Andrew Miller; Tim J Wess
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-02       Impact factor: 11.205

3.  Intrinsic curvature of DNA influences LacR-mediated looping.

Authors:  Sachin Goyal; Todd Lillian; Seth Blumberg; Jens-Christian Meiners; Edgar Meyhöfer; N C Perkins
Journal:  Biophys J       Date:  2007-08-31       Impact factor: 4.033

4.  The role of cross-chain ionic interactions for the stability of collagen model peptides.

Authors:  Neelam Keshwani; Shounak Banerjee; Barbara Brodsky; George I Makhatadze
Journal:  Biophys J       Date:  2013-10-01       Impact factor: 4.033

5.  Twist-Bend Coupling and the Torsional Response of Double-Stranded DNA.

Authors:  Stefanos K Nomidis; Franziska Kriegel; Willem Vanderlinden; Jan Lipfert; Enrico Carlon
Journal:  Phys Rev Lett       Date:  2017-05-26       Impact factor: 9.161

6.  Mapping the intrinsic curvature and flexibility along the DNA chain.

Authors:  G Zuccheri; A Scipioni; V Cavaliere; G Gargiulo; P De Santis; B Samorì
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-27       Impact factor: 11.205

Review 7.  Collagen structure and stability.

Authors:  Matthew D Shoulders; Ronald T Raines
Journal:  Annu Rev Biochem       Date:  2009       Impact factor: 23.643

8.  Non-linearity of the collagen triple helix in solution and implications for collagen function.

Authors:  Kenneth T Walker; Ruodan Nan; David W Wright; Jayesh Gor; Anthony C Bishop; George I Makhatadze; Barbara Brodsky; Stephen J Perkins
Journal:  Biochem J       Date:  2017-06-16       Impact factor: 3.857

9.  Microrheological characterization of collagen systems: from molecular solutions to fibrillar gels.

Authors:  Marjan Shayegan; Nancy R Forde
Journal:  PLoS One       Date:  2013-08-02       Impact factor: 3.240

10.  An endosomal tether undergoes an entropic collapse to bring vesicles together.

Authors:  David H Murray; Marcus Jahnel; Janelle Lauer; Mario J Avellaneda; Nicolas Brouilly; Alice Cezanne; Hernán Morales-Navarrete; Enrico D Perini; Charles Ferguson; Andrei N Lupas; Yannis Kalaidzidis; Robert G Parton; Stephan W Grill; Marino Zerial
Journal:  Nature       Date:  2016-08-24       Impact factor: 49.962

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  9 in total

1.  Sequence-dependent mechanics of collagen reflect its structural and functional organization.

Authors:  Alaa Al-Shaer; Aaron Lyons; Yoshihiro Ishikawa; Billy G Hudson; Sergei P Boudko; Nancy R Forde
Journal:  Biophys J       Date:  2021-08-12       Impact factor: 3.699

2.  Understanding the paradoxical mechanical response of in-phase A-tracts at different force regimes.

Authors:  Alberto Marin-Gonzalez; Cesar L Pastrana; Rebeca Bocanegra; Alejandro Martín-González; J G Vilhena; Rubén Pérez; Borja Ibarra; Clara Aicart-Ramos; Fernando Moreno-Herrero
Journal:  Nucleic Acids Res       Date:  2020-05-21       Impact factor: 16.971

3.  AutoSmarTrace: Automated chain tracing and flexibility analysis of biological filaments.

Authors:  Mathew Schneider; Alaa Al-Shaer; Nancy R Forde
Journal:  Biophys J       Date:  2021-05-20       Impact factor: 3.699

4.  ER-to-Golgi trafficking of procollagen in the absence of large carriers.

Authors:  Janine McCaughey; Nicola L Stevenson; Stephen Cross; David J Stephens
Journal:  J Cell Biol       Date:  2018-12-26       Impact factor: 10.539

5.  A chloride ring is an ancient evolutionary innovation mediating the assembly of the collagen IV scaffold of basement membranes.

Authors:  Vadim Pedchenko; Ryan Bauer; Elena N Pokidysheva; Alaa Al-Shaer; Nancy R Forde; Aaron L Fidler; Billy G Hudson; Sergei P Boudko
Journal:  J Biol Chem       Date:  2019-03-28       Impact factor: 5.157

Review 6.  Coat flexibility in the secretory pathway: a role in transport of bulky cargoes.

Authors:  Joshua Hutchings; Giulia Zanetti
Journal:  Curr Opin Cell Biol       Date:  2019-05-21       Impact factor: 8.382

7.  Brownian dynamics simulation of protofilament relaxation during rapid freezing.

Authors:  Evgeniy V Ulyanov; Dmitrii S Vinogradov; J Richard McIntosh; Nikita B Gudimchuk
Journal:  PLoS One       Date:  2021-02-12       Impact factor: 3.240

8.  Self assembly of model polymers into biological random networks.

Authors:  Matthew H J Bailey; Mark Wilson
Journal:  Comput Struct Biotechnol J       Date:  2021-02-12       Impact factor: 7.271

9.  A general role for TANGO1, encoded by MIA3, in secretory pathway organization and function.

Authors:  Janine McCaughey; Nicola L Stevenson; Judith M Mantell; Chris R Neal; Alex Paterson; Kate Heesom; David J Stephens
Journal:  J Cell Sci       Date:  2021-09-07       Impact factor: 5.285

  9 in total

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