| Literature DB >> 28596797 |
Paolo Vineis1, Phyllis Illari2, Federica Russo3.
Abstract
In the last decades, Systems Biology (including cancer research) has been driven by technology, statistical modelling and bioinformatics. In this paper we try to bring biological and philosophical thinking back. We thus aim at making different traditions of thought compatible: (a) causality in epidemiology and in philosophical theorizing-notably, the "sufficient-component-cause framework" and the "mark transmission" approach; (b) new acquisitions about disease pathogenesis, e.g. the "branched model" in cancer, and the role of biomarkers in this process; (c) the burgeoning of omics research, with a large number of "signals" and of associations that need to be interpreted. In the paper we summarize first the current views on carcinogenesis, and then explore the relevance of current philosophical interpretations of "cancer causes". We try to offer a unifying framework to incorporate biomarkers and omic data into causal models, referring to a position called "evidential pluralism". According to this view, causal reasoning is based on both "evidence of difference-making" (e.g. associations) and on "evidence of underlying biological mechanisms". We conceptualize the way scientists detect and trace signals in terms of information transmission, which is a generalization of the mark transmission theory developed by philosopher Wesley Salmon. Our approach is capable of helping us conceptualize how heterogeneous factors such as micro and macro-biological and psycho-social-are causally linked. This is important not only to understand cancer etiology, but also to design public health policies that target the right causal factors at the macro-level.Entities:
Keywords: Difference-making; Evidential pluralism; Information transmission; Mechanism; Systems biology
Year: 2017 PMID: 28596797 PMCID: PMC5463386 DOI: 10.1186/s12982-017-0061-7
Source DB: PubMed Journal: Emerg Themes Epidemiol ISSN: 1742-7622
Key characteristics of carcinogens (from Smith et al. [6])
| 1. Is electrophilic or can be metabolically activated |
| Parent compound or metabolite with an electrophilic structure (e.g. epoxide, quinone, etc.), formation of DNA and protein adducts |
| 2. Is genotoxic |
| DNA damage (DNA strand breaks, DNA protein cross-links, unscheduled DNA synthesis), intercalation, gene mutations, cytogenetic changes (e.g. chromosome aberrations, micronuclei) |
| 3. Alters DNA repair or causes genomic instability |
| Alterations of DNA replication or repair (e.g. topoisomerase II, base-excision or double-strand break repair) |
| 4. Induces epigenetic alterations |
| DNA methylation, histone modification, microRNA expression |
| 5. Induces oxidative stress |
| Oxygen radicals, oxidative stress, oxidative damage to macromolecules (e.g. DNA, lipids) |
| 6. Induces chronic inflammation |
| Elevated white blood cells, myeloperoxidase activity, altered cytokine and/or chemokine production |
| 7. Is immunosuppressive |
| Decreased immunosurveillance, immune system dysfunction |
| 8. Modulates receptor-mediated effects |
| Receptor in/activation (e.g. ER, PPAR, AhR) or modulation of exogenous ligands (including hormones) |
| 9. Causes immortalization |
| Inhibition of senescence, cell transformation |
| 10. Alters cell proliferation, cell death or nutrient supply |
| Increased proliferation, decreased apoptosis, changes in growth factors, energetics and signaling pathways related to cellular replication or cell cycle |